View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18687_low_3 (Length: 544)
Name: NF18687_low_3
Description: NF18687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18687_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 170 - 445
Target Start/End: Complemental strand, 35341991 - 35341716
Alignment:
| Q |
170 |
tcatcaatgatcaatgaattaaattataaggaagtcaagcgaatcttcaccaaatcaaagctatcgtaataaaggccaagctgctgtcaattgccaaatc |
269 |
Q |
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| T |
35341991 |
tcatcaatgatcaatgaattaaattataaggaagtcaagcgaatcttcaccaaatcaaagctatcgtaataaaggccaagctgctgtcaattgccaaatc |
35341892 |
T |
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| Q |
270 |
aattccaatttccaaactaaactcccaataaaatactgaaatgaattctcacaataacgtgatatgctggcaccgtttgttaatcaatcggacatctttg |
369 |
Q |
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| T |
35341891 |
aattccaatttccaaactaaactcccaataaaatactgaaatgaattctcacaataacgtgatatgctggcaccgtttgttaatcaatcgtacatctttg |
35341792 |
T |
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| Q |
370 |
tcaaatagaataaggattttaaggaaagaaattaatagactagagtgaataaagtattgtccgttctttaccgctt |
445 |
Q |
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| T |
35341791 |
tcaaatagaataaggattttaaggaaagaaattaatagactagagtgaataaagtattgtccgttctttaccgctt |
35341716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 35342229 - 35342060
Alignment:
| Q |
10 |
ataattctcatgagaacctaaaaaacatctattattttcaatcaaaacggaagttacaaagattagatttaagaagnnnnnnnn-------caaatataa |
102 |
Q |
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| T |
35342229 |
ataattctcatgagaacctaaaaaacatctattattttcaatcaaaacggaagttacaaagattagatttaagaaagaaaaaaaaaaaaaacaaatataa |
35342130 |
T |
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| Q |
103 |
ataaattcatgagtggcataattcaaatgccacgattgctacatgacttgattgccaaaaacacaagtca |
172 |
Q |
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| T |
35342129 |
ataaattcatgagcggcataattcaaatgccacgattgctacatgacttgattgccaaaaacacaagtca |
35342060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 447 - 526
Target Start/End: Complemental strand, 35341526 - 35341447
Alignment:
| Q |
447 |
tcttcagcatactttatgaactcgtgctcacattagacggtgatacaacccaactgtttgagaccacctctatgtgatat |
526 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
35341526 |
tcttcagcatactttatgaactcgtgctcacattagacggtgatacaacccaactgtttgagaccacctgtatttgatat |
35341447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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