View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18687_low_4 (Length: 441)

Name: NF18687_low_4
Description: NF18687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18687_low_4
NF18687_low_4
[»] chr6 (11 HSPs)
chr6 (20-412)||(2659015-2659410)
chr6 (20-379)||(2997412-2997771)
chr6 (20-378)||(2964193-2964563)
chr6 (137-396)||(2982559-2982818)
chr6 (136-397)||(2934285-2934546)
chr6 (20-378)||(2951647-2951993)
chr6 (20-397)||(2926846-2927211)
chr6 (20-397)||(3003802-3004173)
chr6 (136-368)||(2973728-2973960)
chr6 (20-56)||(2982881-2982917)
chr6 (20-71)||(2934602-2934653)
[»] scaffold0024 (1 HSPs)
scaffold0024 (122-396)||(35344-35618)
[»] chr7 (1 HSPs)
chr7 (161-387)||(3338877-3339091)
[»] chr3 (3 HSPs)
chr3 (282-399)||(49618079-49618196)
chr3 (136-204)||(49618292-49618361)
chr3 (28-204)||(49613312-49613488)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 20 - 412
Target Start/End: Original strand, 2659015 - 2659410
Alignment:
Q  20 taatatcaccattatcaaaagacaattttgatttattgtaataacgaaaatacttaataacgagtacaagaaaaggagggatcctagtgttaggattact 119  Q
    |||||||||||||||||||| |||| |||||||||||| || ||  |||||| ||||||  |||| ||||||||  ||||||| |||| ||||||  |||    
T  2659015 taatatcaccattatcaaaaaacaagtttgatttattggaagaataaaaatatttaatagtgagttcaagaaaaccagggatcgtagtcttaggaacact 2659114  T
Q  120 agcatttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatat 219  Q
    |||||||||| ||||  ||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| | ||| |    
T  2659115 agcatttgtagaactcgatgaaagtttgtaaatttcttcaataacgaaaaagggaagctgattttcaagtaacaataaatctaatgctataccatcatct 2659214  T
Q  220 aaccaaggtttaaagagaatcc---caccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcat 316  Q
    |||||||||||||| |||| ||   || || ||  |  | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  2659215 aaccaaggtttaaatagaaacccatcatcataatagtatgtccaaaaaagttgaattataaaacaggaatcgattaagattaacttaacaagttcattat 2659314  T
Q  317 gagaaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaacttgtgttggttcgtt 412  Q
     ||||||||| | |||||| |||||||| | |||||||  ||||||| |||| | || || |||||||||||||| ||||| ||  ||||||||||    
T  2659315 cagaaaatggtagggtttcggaataacaacttttgaaacgagataagttagattttatgttgctgaccaaggtgtctaaacatgcattggttcgtt 2659410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 2997412 - 2997771
Alignment:
Q  20 taatatcaccattatcaaaagacaattttgatttattgtaataacgaaaatacttaataacgagtacaagaaaaggagggatcctagtgttaggattact 119  Q
    |||||||||||| ||||||| |||| |||||||||||| || ||   ||| | ||||||  |||| ||||||||  ||||||| ||||||||||||||||    
T  2997412 taatatcaccatcatcaaaaaacaagtttgatttattgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttaggattact 2997511  T
Q  120 agcatttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatat 219  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||| |  |  ||||| | |||      
T  2997512 agcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatttgttgttataccatcatcg 2997611  T
Q  220 aaccaaggtttaaagagaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgag 319  Q
    |||||| ||| ||||| || ||||||| |   |  |||| | ||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  2997612 aaccaaagttcaaagacaaacccaccatagtggtatctcaagaaaagttcaattataaaaccggaatcgattaagattaacttaacaagttcatcatgag 2997711  T
Q  320 aaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagc 379  Q
    ||||||| | |||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  2997712 aaaatggtagggtttcggaataacaacgtttgaaattagataagatagaatctacgtagc 2997771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 2964563 - 2964193
Alignment:
Q  20 taatatcaccattatcaaaagacaattttgatttattgtaataacgaaaatacttaataacgagtacaagaaaaggagggatcctagtgttaggattact 119  Q
    |||||||||| |||||||||  ||||||||||||||||||||||  |||||| | | ||  ||||  |||||||| ||||||  |||||||||||  |||    
T  2964563 taatatcacccttatcaaaatccaattttgatttattgtaataatcaaaataatcagtagtgagtttaagaaaagaagggatgttagtgttaggaacact 2964464  T
Q  120 agcatttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatat 219  Q
    |||||||||| |||| ||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||| ||  ||||| |||||||    
T  2964463 agcatttgtagaactcaatgaaagactgtaaattttttcaataacgaaatagggaagctgattttcaagtaacattaaatctgatcttataccaacatat 2964364  T
Q  220 aaccaaggtttaaagagaat---------cc---caccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaa 307  Q
    ||||||||| || |||||||         ||   || || ||  |  ||| |||||| ||| ||| |||||||  |||||||||||||||||||| ||||    
T  2964363 aaccaaggtatagagagaatattaatgcaccgaacatcataataggatctgcaaaaaagttcaattataaaaccagaatcgattaagattaacttgacaa 2964264  T
Q  308 gttcatcatgagaaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtag 378  Q
    ||||||||||||||||||| |  ||||| |||||||||| |||||||||||||||||||| ||||| ||||    
T  2964263 gttcatcatgagaaaatggtagagtttcggaataacagcatttgaaatcagataagatagcatctatgtag 2964193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 137 - 396
Target Start/End: Complemental strand, 2982818 - 2982559
Alignment:
Q  137 atgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaagag 236  Q
    ||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||| || |||  |||||||| ||   | ||||||||||| ||||||    
T  2982818 atgaacgactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacagtacatcatataatataagactttttaaccaaggttgaaagag 2982719  T
Q  237 aatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttca 336  Q
    |  ||||||| ||     |||||||||| ||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||||||| | || ||||    
T  2982718 agccccaccataatattttctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcattatgagaaaatggtaggggttca 2982619  T
Q  337 gaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaa 396  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  2982618 gaataacagtgtttgaaatcagataagatagaatctacgtagcagaccaagtcgtttaaa 2982559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 136 - 397
Target Start/End: Complemental strand, 2934546 - 2934285
Alignment:
Q  136 aatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaaga 235  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||   |  ||||| |  || |||| ||||||||||||    
T  2934546 aatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacattaaatcgtctgttataccagtatctaacaaaggtttaaaga 2934447  T
Q  236 gaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttc 335  Q
    ||  |||  || ||  | ||||||||||| ||||||| ||||||  |||||| ||||| |||||||||||||||||||||||||||||||| | ||||||    
T  2934446 gacgcccttcataatagtctctccaaaaaagttgaattataaaagcggaatctattaaaattaacttaacaagttcatcatgagaaaatggtagggtttc 2934347  T
Q  336 agaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaac 397  Q
    ||||||||| ||||||||||||||||||||||| |||| ||||| ||| |||  ||||||||    
T  2934346 agaataacaacgtttgaaatcagataagatagattctatgtagcagactaagtcgtttaaac 2934285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 378
Target Start/End: Complemental strand, 2951993 - 2951647
Alignment:
Q  20 taatatcaccattatcaaaagacaattttgatttattgtaataacgaaaatacttaataacgagtacaagaaaaggagggatcctagtgttaggattact 119  Q
    |||||||||| |||||||||  ||||||||||||||||||||||| |||||| | ||||  ||||  |||||||| | ||||| ||||| |||||  | |    
T  2951993 taatatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtgataggaacatt 2951894  T
Q  120 agcatttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatat 219  Q
    ||            | ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||   || ||||| |  |  |    
T  2951893 ag------------tcaatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtattataccagtacct 2951806  T
Q  220 aaccaaggtttaaagagaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgag 319  Q
    |||||||||||||||||   |||  || ||  |  | |||||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
T  2951805 aaccaaggtttaaagagctccccttcataacaggatgtccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgag 2951706  T
Q  320 aaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtag 378  Q
    ||||||| | ||||||||||||||| | ||||||||||||||||||||| |||| ||||    
T  2951705 aaaatggtagggtttcagaataacaacttttgaaatcagataagatagattctatgtag 2951647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 2927211 - 2926846
Alignment:
Q  20 taatatcaccattatcaaaagacaattttgatttattgtaataacgaaaatacttaataacgagtacaagaaaaggagggatcctagtgttaggattact 119  Q
    |||||||||| |||||||||  ||||||||||||||||||||||| |||||| | ||||  ||||  |||||||| | ||||| ||||| |||||  | |    
T  2927211 taatatcacccttatcaaaattcaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtggtaggaacatt 2927112  T
Q  120 agcatttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatat 219  Q
    ||            | ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||   |  ||||| |  || |    
T  2927111 ag------------tcaatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtcttataccattatct 2927024  T
Q  220 aaccaaggtttaaagagaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgag 319  Q
    ||||||||||||||||||  |||  |  ||  |  | |||||||| ||||||| ||||||  ||||| ||||||||||||||||||||||||||||||||    
T  2927023 aaccaaggtttaaagagacacccttcgtaataggatgtccaaaaaagttgaattataaaagcggaattgattaagattaacttaacaagttcatcatgag 2926924  T
Q  320 aaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaac 397  Q
    ||||||| | |||||| |||||||| ||||||||||||||||||||||| |||| ||||| ||| |||  ||||||||    
T  2926923 aaaatggtagggtttcggaataacaacgtttgaaatcagataagatagattctatgtagccgactaagtcgtttaaac 2926846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 3003802 - 3004173
Alignment:
Q  20 taatatcaccattatcaaaagacaattttgatttattgtaataacgaaaatacttaataacgagtacaagaaaaggagggatcctagtgttaggattact 119  Q
    |||||||||| |||||||||  ||||||||||||||||||||||| |||||| | ||||  ||||  |||||||| | ||||| ||||| |||||  | |    
T  3003802 taatatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtggtaggaacatt 3003901  T
Q  120 agcatttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatat 219  Q
    ||            | ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||   |  ||||| |  || |    
T  3003902 ag------------tcaatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtttcttataccattatct 3003989  T
Q  220 aaccaaggtttaaagagaat---cccac---cacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcat 313  Q
    ||||||||||||||||||||   || ||   || ||  |  |||||||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  3003990 aaccaaggtttaaagagaatgcaccgacgatcataatagtatctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcat 3004089  T
Q  314 catgagaaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaac 397  Q
    ||||||||||||| | |||||| |||||||| ||||||||||||||||||| ||| |||| ||||| ||| |||  ||||||||    
T  3004090 catgagaaaatggtagggtttcggaataacaacgtttgaaatcagataagacagattctatgtagcagactaagtcgtttaaac 3004173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 136 - 368
Target Start/End: Complemental strand, 2973960 - 2973728
Alignment:
Q  136 aatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaaga 235  Q
    ||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||  |  ||||||||||||||| ||||    
T  2973960 aatgaaatactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatgatatatcattatataaccaaggttttaaga 2973861  T
Q  236 gaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttc 335  Q
    ||   ||  |||||  |  |||| | ||||||| ||| ||||||| |||||| ||||| ||||||||||||||||||  |||||||||||  | |||||     
T  2973860 gatcaccttcacaacaggatctcaataaatgttcaattataaaaccggaatccattaaaattaacttaacaagttcaatatgagaaaatgatagggtttt 2973761  T
Q  336 agaataacagcgtttgaaatcagataagataga 368  Q
     |||||||||| |||||||||||||||||||||    
T  2973760 ggaataacagcctttgaaatcagataagataga 2973728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 2982917 - 2982881
Alignment:
Q  20 taatatcaccattatcaaaagacaattttgatttatt 56  Q
    |||||||||||||||||||||||||||||||||||||    
T  2982917 taatatcaccattatcaaaagacaattttgatttatt 2982881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 2934653 - 2934602
Alignment:
Q  20 taatatcaccattatcaaaagacaattttgatttattgtaataacgaaaata 71  Q
    |||||||||| |||||||||  ||||||||||||||||||||||| ||||||    
T  2934653 taatatcacccttatcaaaatccaattttgatttattgtaataaccaaaata 2934602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 122 - 396
Target Start/End: Original strand, 35344 - 35618
Alignment:
Q  122 catttgtaaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataa 221  Q
    |||||||| ||||  | ||||||  |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||  ||||| | ||| |||    
T  35344 catttgtagaactccacgaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatcttataccagcatctaa 35443  T
Q  222 ccaaggtttaaagagaatcccaccacaagtgactctccaaaaatgttgaataataaaacaggaatcgattaagattaacttaacaag---ttcatcatga 318  Q
    ||||||||  | || ||||   |   || |   | |||||||| ||||||| ||||||| |||||||||||||||||||||||||||   |||||| |||    
T  35444 ccaaggttctagga-aatctttcttaaaata--tttccaaaaaagttgaattataaaaccggaatcgattaagattaacttaacaagttcttcatcctga 35540  T
Q  319 gaaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagctgaccaaggtgtttaaa 396  Q
    | |||||  | |||||| |||||||| | ||||||||||||||||||||||| || || ||||| |||| || |||||    
T  35541 ggaaatgatagggtttccgaataacaacatttgaaatcagataagatagaatatatgtcgctgatcaagatgcttaaa 35618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 387
Target Start/End: Complemental strand, 3339091 - 3338877
Alignment:
Q  161 taacgaaaaatggaagctgattttcaagtaacaataaatctaataatatacgaacatataaccaaggtttaaagagaatcccaccacaagtgactctcca 260  Q
    |||||||||| |||||||||||||||||||||||||||||| || |||||| | |    ||||||||||||||||||  |  |||||||               
T  3339091 taacgaaaaagggaagctgattttcaagtaacaataaatctgatgatataccacctaccaaccaaggtttaaagagagacataccacaa----------- 3339003  T
Q  261 aaaatgttgaataataaaacaggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttcagaataacagcgtttgaaatcagat 360  Q
     ||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||  | |  ||| |||||||| ||||||||||||| |    
T  3339002 -aaaagttgaattataaaaccggaatcgattaagattaacttaacaagtttatcatcagaaaatgttaggaattccgaataacaacgtttgaaatcaggt 3338904  T
Q  361 aagatagaatctacgtagctgaccaag 387  Q
    |||||||| |||||||||  |||||||    
T  3338903 aagatagactctacgtagaagaccaag 3338877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 399
Target Start/End: Complemental strand, 49618196 - 49618079
Alignment:
Q  282 ggaatcgattaagattaacttaacaagttcatcatgagaaaatgggaaggtttcagaataacagcgtttgaaatcagataagatagaatctacgtagctg 381  Q
    |||||| ||||||||||||||||||| ||||||||||| |||| | | |||||  |||||| || | ||||||| ||||||||| ||||||| ||||| |    
T  49618196 ggaatcaattaagattaacttaacaaattcatcatgagtaaattgtagggttttggaataagagtgattgaaatgagataagatggaatctatgtagcag 49618097  T
Q  382 accaaggtgtttaaactt 399  Q
    | ||| ||||| ||||||    
T  49618096 aacaacgtgttcaaactt 49618079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 49618361 - 49618292
Alignment:
Q  136 aatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagt-aacaataaatctaat 204  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||||||    
T  49618361 aatgaaagaatgtaaatattttcaataacgaaatagggaagctgattttgaagtaaacaataaatctaat 49618292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 49613488 - 49613312
Alignment:
Q  28 ccattatcaaaagacaattttgatttattgtaataacgaaaatacttaataacgagtacaagaaaaggagggatcctagtgttaggattactagcatttg 127  Q
    ||||||||||||  ||| ||||||| |||||||||   |||||| | || |   ||| ||||||||| ||||||  |||| || |||  |||||| || |    
T  49613488 ccattatcaaaacccaagtttgattgattgtaatatgcaaaataatcaaaactaagttcaagaaaagaagggattttagtcttgggaacactagcgttag 49613389  T
Q  128 taaaactgaatgaaagattgtaaatattttcaataacgaaaaatggaagctgattttcaagtaacaataaatctaat 204  Q
    || || | ||||||||||||||||| | || |||||| |||||||| |  ||||||||||||||||| |||||||||    
T  49613388 tagaagtaaatgaaagattgtaaatttcttgaataacaaaaaatggcaattgattttcaagtaacaacaaatctaat 49613312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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