View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18687_low_5 (Length: 441)
Name: NF18687_low_5
Description: NF18687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18687_low_5 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 66 - 441
Target Start/End: Original strand, 38644434 - 38644809
Alignment:
| Q |
66 |
tctttaaaatgtaaccataatcaaccaaaaccaaaatgtagacaatgttgttcaccaagtagacaaaacattaggaggcaccaagtaaaaaatgtgattg |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38644434 |
tctttaaaatgtaaccataatcaaccaaaaccaaaatgtagacaatgttgttcaccaagtagacaaaacattaggaggcaccaagtaaaaaatgtgattg |
38644533 |
T |
|
| Q |
166 |
aaagggctttaaatagatatgatttcaatgtgggatatatgaacaaaccttattttgtgtctccattccctactgttgctctacaaacagaactttcttg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38644534 |
aaagggctttaaatagatatgatttcaatgtgggatatatgaacaaaccttattttgtgtctccattccctaatgttgctctacaaacagaactttcttg |
38644633 |
T |
|
| Q |
266 |
aggatataaagttcctaagttcacatggttttctagtgaatatggggagtccatagtagaacacgtggctaggcat-cnnnnnnngtgcagggatatatc |
364 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38644634 |
a-gatataaagttcctaagttcacatagttttctagtgaatatggggagtccatagtagaacacgtggctaggcataaaaaaaaagtgcagggatatatc |
38644732 |
T |
|
| Q |
365 |
aaatgatgaaattttgaaattgaaatatttccctagttcattacattaaccaatgattcctttacttggtttactat |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38644733 |
aaatgatgaaattttgaaattgaaatatttccctagttcattacattaaccaatgattcttttacttggtttactat |
38644809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 38661295 - 38661121
Alignment:
| Q |
23 |
aggaaaattagaatcggcaaactattcgagtttcaagaatagatctttaaaatgtaaccataatcaaccaaaaccaaaatgtagacaatgttgttcacca |
122 |
Q |
| |
|
||||||||| ||||| | |||||||||| |||||||||||||| || |||||| | ||||||||||||||| ||||||| |||||||||||| || || |
|
|
| T |
38661295 |
aggaaaatttgaatccaccaactattcgaatttcaagaatagatacttgaaatgtgaacataatcaaccaaaatcaaaatg-agacaatgttgtccagca |
38661197 |
T |
|
| Q |
123 |
agtagacaaaacattaggaggcaccaagtaaaaaatgtgattgaaagggctttaaatagatatgatttcaatgtggg |
199 |
Q |
| |
|
||||||||||||| | || |||||||||||||||||| ||| |||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
38661196 |
agtagacaaaacactggg-ggcaccaagtaaaaaatgcgatcgaaatggcttaaaatagacatgatttcaatgtggg |
38661121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 212 - 341
Target Start/End: Complemental strand, 38660069 - 38659941
Alignment:
| Q |
212 |
accttattttgtgtctccattccctactgttgctctacaaacagaactttcttgaggatataaagttcctaagttcacatggttttctagtgaatatggg |
311 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| || | ||||||||||||||||| |||||| | |||||||| | ||||||||||||||| |
|
|
| T |
38660069 |
accttattttgtgtctccattccctaatgttgttctataagccgaactttcttgaggatacaaagtttcaaagttcacttagttttctagtgaata-ccc |
38659971 |
T |
|
| Q |
312 |
gagtccatagtagaacacgtggctaggcat |
341 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38659970 |
cagtccatagtagaacacgtggctaggcat |
38659941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 27800825 - 27800662
Alignment:
| Q |
62 |
tagatctttaaaatgtaaccataatcaaccaaaaccaaaatgtagacaatgttgttcaccaa-gtagacaaaacatt-aggaggcaccaagtaaaaaatg |
159 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||||| ||||||||||||| || |||||||||| ||| || |
|
|
| T |
27800825 |
tagatctttaaaatgtaaccataatcaaatgaaatcaaaatgtagacaacattgtccaccaatttagacaaaacattgggggggcaccaagtcaaagata |
27800726 |
T |
|
| Q |
160 |
tgattgaaagggctttaaatagatatgatttcaatgtgggatatatgaacaaaccttattttgt |
223 |
Q |
| |
|
| |||| ||| |||| | | |||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
27800725 |
gggccgaaaaagctataaacaaacatgatttcaatgtgggatatgtgaacaaaacttattttgt |
27800662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 38658466 - 38658428
Alignment:
| Q |
355 |
gggatatatcaaatgatgaaattttgaaattgaaatatt |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38658466 |
gggatatatcaaatgatgaaattttgaaattgaaatatt |
38658428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University