View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18687_low_6 (Length: 432)

Name: NF18687_low_6
Description: NF18687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18687_low_6
NF18687_low_6
[»] chr4 (9 HSPs)
chr4 (9-419)||(6073452-6073861)
chr4 (11-159)||(6069084-6069232)
chr4 (58-159)||(5697553-5697656)
chr4 (186-253)||(6069011-6069078)
chr4 (192-240)||(5697668-5697716)
chr4 (339-392)||(25700463-25700516)
chr4 (339-385)||(6462793-6462839)
chr4 (339-369)||(35005136-35005166)
chr4 (339-385)||(41459427-41459473)
[»] scaffold0386 (2 HSPs)
scaffold0386 (9-156)||(312-459)
scaffold0386 (192-240)||(251-299)
[»] chr7 (3 HSPs)
chr7 (336-367)||(24617828-24617859)
chr7 (337-366)||(22752592-22752621)
chr7 (339-392)||(30486590-30486643)
[»] chr5 (3 HSPs)
chr5 (339-374)||(12295757-12295792)
chr5 (262-373)||(29112281-29112390)
chr5 (339-392)||(10495217-10495270)
[»] chr3 (2 HSPs)
chr3 (337-367)||(24369137-24369167)
chr3 (339-367)||(27102188-27102216)
[»] chr1 (1 HSPs)
chr1 (339-372)||(39940567-39940600)
[»] chr8 (1 HSPs)
chr8 (339-367)||(2627205-2627233)
[»] chr6 (1 HSPs)
chr6 (344-392)||(29168487-29168535)
[»] chr2 (2 HSPs)
chr2 (339-367)||(18731351-18731379)
chr2 (340-392)||(23962355-23962407)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 419
Target Start/End: Complemental strand, 6073861 - 6073452
Alignment:
Q  9 gattattctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctaccatcatt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6073861 gattattctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctaccatcatg 6073762  T
Q  109 ctaatgattatcaacctcctacaatcatttacacacgtgttcctttatttacccattggctcaataagnnnnnnnnn-cattgtctcaataaatatttct 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||          ||||||||||||||||||||||    
T  6073761 ctaatgattatcaacctcctacaatcatttacacacatgttcctttatttacccattgggtcaataagaaaaaaaaaacattgtctcaataaatatttct 6073662  T
Q  208 tgggtattgattcaagaattggtaatctgcatcctgatgtatagatcaacataaactccctccaatcttaattataagcaattttttatattttacatta 307  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  6073661 tgggtattggttcaagaattggtaatttgcatcctgatgtatagatcaacataaactccctccaaccttaattataagcaatattttattttttacatta 6073562  T
Q  308 attcaaaaaatgatgtatataccacatatatatacattatttattgaatgaatctaaaaattaaaaatttggttataaatgagacaatagggggtatgtg 407  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||||||  ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  6073561 attcaaaaaatgatgtatataccacata--tatacatcatttattgaatgatcctaaaaactaaaaatttggttataaataagacaatagggggtatgtg 6073464  T
Q  408 tttgttgtacct 419  Q
    ||||||||||||    
T  6073463 tttgttgtacct 6073452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 159
Target Start/End: Complemental strand, 6069232 - 6069084
Alignment:
Q  11 ttattctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctaccatcattct 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| ||||| ||    
T  6069232 ttattctatgcatgcatgcaaaaattgtaccacaatacttgagcactgaaattgacatatactttgcgaactactatatataagtttctacaatcatgct 6069133  T
Q  111 aatgattatcaacctcctacaatcatttacacacgtgttcctttattta 159  Q
    ||| || ||||||||||||||||||||||||||| ||||||||||||||    
T  6069132 aatcatcatcaacctcctacaatcatttacacacatgttcctttattta 6069084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 5697553 - 5697656
Alignment:
Q  58 gaaattgacatatactttgcaaaccactata--tataagtttctaccatcattctaatgattatcaacctcctacaatcatttacacacgtgttccttta 155  Q
    ||||||||||||||||||||| |||||||||  ||||||||||||| ||||| ||||| || |||| |||||||||||||||||||||| ||||||||||    
T  5697553 gaaattgacatatactttgcataccactatatatataagtttctacaatcatgctaatcatcatcagcctcctacaatcatttacacacatgttccttta 5697652  T
Q  156 ttta 159  Q
    ||||    
T  5697653 ttta 5697656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 6069078 - 6069011
Alignment:
Q  186 cattgtctcaataaatatttcttgggtattgattcaagaattggtaatctgcatcctgatgtatagat 253  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||| || |||||    
T  6069078 cattgcctcaataaatatttcttgtgtattggttcaagaattggtaatctgcatcctgaggtgtagat 6069011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 5697668 - 5697716
Alignment:
Q  192 ctcaataaatatttcttgggtattgattcaagaattggtaatctgcatc 240  Q
    |||||||||||||||||| |||||| || ||||||||||||||||||||    
T  5697668 ctcaataaatatttcttgtgtattggtttaagaattggtaatctgcatc 5697716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 25700516 - 25700463
Alignment:
Q  339 atacattatttattgaatgaatctaaaaattaaaaatttggttataaatgagac 392  Q
    |||||| ||||| |||||||||||||||| |||||||||  |||||||||||||    
T  25700516 atacatcatttactgaatgaatctaaaaagtaaaaatttatttataaatgagac 25700463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 385
Target Start/End: Original strand, 6462793 - 6462839
Alignment:
Q  339 atacattatttattgaatgaatctaaaaattaaaaatttggttataa 385  Q
    |||||| |||||||||||||||||||||| ||||| |||| ||||||    
T  6462793 atacatcatttattgaatgaatctaaaaaataaaattttgtttataa 6462839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 369
Target Start/End: Original strand, 35005136 - 35005166
Alignment:
Q  339 atacattatttattgaatgaatctaaaaatt 369  Q
    |||||||||||||||||||||||||||||||    
T  35005136 atacattatttattgaatgaatctaaaaatt 35005166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 41459473 - 41459427
Alignment:
Q  339 atacattatttattgaatgaatctaaaaattaaaaatttggttataa 385  Q
    |||||| |||||||||||||||||||||| | |||||||| ||||||    
T  41459473 atacatcatttattgaatgaatctaaaaaatcaaaatttgtttataa 41459427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 459 - 312
Alignment:
Q  9 gattattctatacatgcatgcaaaaattgtaccacaatacttgagctctgaaattgacatatactttgcaaaccactatatataagtttctaccatcatt 108  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||     
T  459 gattattctatacatgcatgcaaaaattgtaccacaacacttgagcactgaaattgacataaactttgcaaaccactatatataagtttctacaatcatg 360  T
Q  109 ctaatgattatcaacctcctacaatcatttacacacgtgttcctttat 156  Q
    ||||| || ||||||||||||||||||||||||||| | |||||||||    
T  359 ctaatcatcatcaacctcctacaatcatttacacacatattcctttat 312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 299 - 251
Alignment:
Q  192 ctcaataaatatttcttgggtattgattcaagaattggtaatctgcatc 240  Q
    |||||||||||||||||  |||||| || ||||||||||||||||||||    
T  299 ctcaataaatatttcttatgtattggtttaagaattggtaatctgcatc 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 367
Target Start/End: Complemental strand, 24617859 - 24617828
Alignment:
Q  336 tatatacattatttattgaatgaatctaaaaa 367  Q
    ||||||||||||||||||||||||||||||||    
T  24617859 tatatacattatttattgaatgaatctaaaaa 24617828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 366
Target Start/End: Complemental strand, 22752621 - 22752592
Alignment:
Q  337 atatacattatttattgaatgaatctaaaa 366  Q
    ||||||||||||||||||||||||||||||    
T  22752621 atatacattatttattgaatgaatctaaaa 22752592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 30486643 - 30486590
Alignment:
Q  339 atacattatttattgaatgaatctaaaaattaaaaatttggttataaatgagac 392  Q
    |||||||||||||| |||||||||||||| | ||||||   |||||||||||||    
T  30486643 atacattatttattcaatgaatctaaaaaatgaaaattgacttataaatgagac 30486590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 374
Target Start/End: Original strand, 12295757 - 12295792
Alignment:
Q  339 atacattatttattgaatgaatctaaaaattaaaaa 374  Q
    ||||||||||||||||||||||||||||| ||||||    
T  12295757 atacattatttattgaatgaatctaaaaagtaaaaa 12295792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 373
Target Start/End: Original strand, 29112281 - 29112390
Alignment:
Q  262 actccctccaatcttaattataagcaattttttatattttacattaattcaaaaaatgatgtatataccacatatatatacattatttattgaatgaatc 361  Q
    |||||||||  | ||||||||||||||  |||||| |||||  || ||||||  ||||||||||||||  |||| |||||||| ||| |||||||||| |    
T  29112281 actccctccgtttttaattataagcaa-attttattttttaggttcattcaattaatgatgtatatacatcata-atatacatcattaattgaatgaacc 29112378  T
Q  362 taaaaattaaaa 373  Q
    |||||| |||||    
T  29112379 taaaaagtaaaa 29112390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 10495270 - 10495217
Alignment:
Q  339 atacattatttattgaatgaatctaaaaattaaaaatttggttataaatgagac 392  Q
    |||||| |||||||||||||||||||||| | |||||||  |||||||| ||||    
T  10495270 atacatcatttattgaatgaatctaaaaaatcaaaatttacttataaataagac 10495217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 367
Target Start/End: Complemental strand, 24369167 - 24369137
Alignment:
Q  337 atatacattatttattgaatgaatctaaaaa 367  Q
    |||||||||||||||||||||||||||||||    
T  24369167 atatacattatttattgaatgaatctaaaaa 24369137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 367
Target Start/End: Original strand, 27102188 - 27102216
Alignment:
Q  339 atacattatttattgaatgaatctaaaaa 367  Q
    |||||||||||||||||||||||||||||    
T  27102188 atacattatttattgaatgaatctaaaaa 27102216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 372
Target Start/End: Original strand, 39940567 - 39940600
Alignment:
Q  339 atacattatttattgaatgaatctaaaaattaaa 372  Q
    ||||||||||||||||||||||||||||| ||||    
T  39940567 atacattatttattgaatgaatctaaaaagtaaa 39940600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 367
Target Start/End: Complemental strand, 2627233 - 2627205
Alignment:
Q  339 atacattatttattgaatgaatctaaaaa 367  Q
    |||||||||||||||||||||||||||||    
T  2627233 atacattatttattgaatgaatctaaaaa 2627205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 29168535 - 29168487
Alignment:
Q  344 ttatttattgaatgaatctaaaaattaaaaatttggttataaatgagac 392  Q
    ||||| || ||||||||||||||| | |||||||| |||||||||||||    
T  29168535 ttattcatcgaatgaatctaaaaagtcaaaatttgcttataaatgagac 29168487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 367
Target Start/End: Original strand, 18731351 - 18731379
Alignment:
Q  339 atacattatttattgaatgaatctaaaaa 367  Q
    |||||||||||||||||||||||||||||    
T  18731351 atacattatttattgaatgaatctaaaaa 18731379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 23962355 - 23962407
Alignment:
Q  340 tacattatttattgaatgaatctaaaaattaaaaatttggttataaatgagac 392  Q
    ||||| |||||||||||||||||||||| |||||| ||| ||| || ||||||    
T  23962355 tacatcatttattgaatgaatctaaaaagtaaaaagttgcttacaattgagac 23962407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University