View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18687_low_7 (Length: 400)

Name: NF18687_low_7
Description: NF18687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18687_low_7
NF18687_low_7
[»] chr3 (5 HSPs)
chr3 (9-280)||(17502453-17502725)
chr3 (281-383)||(51242079-51242183)
chr3 (163-256)||(17474106-17474200)
chr3 (9-55)||(17474557-17474603)
chr3 (109-140)||(17474523-17474554)
[»] chr1 (1 HSPs)
chr1 (281-383)||(2626394-2626496)
[»] chr7 (2 HSPs)
chr7 (306-383)||(17352522-17352599)
chr7 (306-350)||(22367247-22367291)
[»] chr4 (1 HSPs)
chr4 (311-382)||(33033669-33033740)
[»] chr5 (1 HSPs)
chr5 (281-323)||(41699875-41699917)


Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 17502725 - 17502453
Alignment:
Q  9 ttattctacgttttactttaatcatacggtttaagtaaagaaatcaaagtccgtattcatatgaatgttgctgaaaacaaattattaaggagttgttgac 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17502725 ttattctacgttttactttaatcatacggtttaagtaaagaaatcaaagtccctattcatatgaatgttgctgaaaacaaattattaaggagttgttgac 17502626  T
Q  109 ttgaaagtttgatgtaatattccttcaaggggacgttttccttaaatgaattgaaattctaaagcattaattaatcttggaactgaaccattcattttta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  17502625 ttgaaagtttgatgtaatattccttcaaggggacgttttccttaaatgaattgaaattctaaaccattaattaataatggaactgaaccattcattttta 17502526  T
Q  209 cat-agcaaaagaagttcttattatgccaaaccttgttgaatgcaaacaaaactaatgaatttaacttcaatt 280  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17502525 cataagcaaaagaagttcttattatgccaaaccttgttgaatgcaaacaaaactaatgaatttaacttcaatt 17502453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 281 - 383
Target Start/End: Original strand, 51242079 - 51242183
Alignment:
Q  281 gaacaaaccaaagaatccatgaaa--caagagaaaacagtggaaggatcattgaacaacaatggagaaaaaagagtggaaaattcattgggcaacataga 378  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51242079 gaacaaaccaaagaatcaatgaaaaacaagagaaaacagtggaaggatcattgaacaacaatggagaaaaaagagcggaaaattcattgggcaacataga 51242178  T
Q  379 agaag 383  Q
    |||||    
T  51242179 agaag 51242183  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 17474200 - 17474106
Alignment:
Q  163 aattctaaagcattaattaatcttggaactgaaccattcatttttacatagcaaaagaagttc-ttattatgccaaaccttgttgaatgcaaaca 256  Q
    ||||||| | |||||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  17474200 aattctataccattaattaatcatggaactaaaccattcattcttacatagcaaaagaagttctttaatatgccaaaccttgttgaatgcaaaca 17474106  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 17474603 - 17474557
Alignment:
Q  9 ttattctacgttttactttaatcatacggtttaagtaaagaaatcaa 55  Q
    |||||||||||||||||||||||||| | |||||||| |||||||||    
T  17474603 ttattctacgttttactttaatcatatgttttaagtatagaaatcaa 17474557  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 140
Target Start/End: Complemental strand, 17474554 - 17474523
Alignment:
Q  109 ttgaaagtttgatgtaatattccttcaagggg 140  Q
    ||||||||||||||||||||||||||||||||    
T  17474554 ttgaaagtttgatgtaatattccttcaagggg 17474523  T

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Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 281 - 383
Target Start/End: Complemental strand, 2626496 - 2626394
Alignment:
Q  281 gaacaaaccaaagaatccatgaaacaagagaaaacagtggaaggatcattgaacaacaatggagaaaaaagagtggaaaattcattgggcaacatagaag 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626496 gaacaaaccaaagaatccatgaaacaagagaaaacagtggaaggatcattgaacaacaatggagaaaaaagagtggaaaattcattgggcaacatagaag 2626397  T
Q  381 aag 383  Q
    |||    
T  2626396 aag 2626394  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 17352599 - 17352522
Alignment:
Q  306 aagagaaaacagtggaaggatcattgaacaacaatggagaaaaaagagtggaaaattcattgggcaacatagaagaag 383  Q
    |||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||||    
T  17352599 aagaaaaaacagtggaaggatcattgaactacaatggagaaaaaacagtggaaaattcattgggtagcatagaagaag 17352522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 22367291 - 22367247
Alignment:
Q  306 aagagaaaacagtggaaggatcattgaacaacaatggagaaaaaa 350  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  22367291 aagaaaaaacagtggaaggatcattgaacaacaatggagaaaaaa 22367247  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 33033740 - 33033669
Alignment:
Q  311 aaaacagtggaaggatcattgaacaacaatggagaaaaaagagtggaaaattcattgggcaacatagaagaa 382  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||  | ||||||||||    
T  33033740 aaaatagtggaaggatcattgaactacaatggagaaaaaacagtggaaaattcattggatagcatagaagaa 33033669  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 41699875 - 41699917
Alignment:
Q  281 gaacaaaccaaagaatccatgaaacaagagaaaacagtggaag 323  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  41699875 gaacaaaccaaagaatccatgaaacaagataaaacagtggaag 41699917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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