View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18688_low_1 (Length: 600)

Name: NF18688_low_1
Description: NF18688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18688_low_1
NF18688_low_1
[»] chr5 (4 HSPs)
chr5 (18-590)||(656334-656906)
chr5 (483-542)||(12842972-12843031)
chr5 (488-542)||(37022666-37022720)
chr5 (491-542)||(24092098-24092149)
[»] chr4 (5 HSPs)
chr4 (396-478)||(3896085-3896167)
chr4 (396-476)||(3144996-3145076)
chr4 (488-542)||(14027054-14027108)
chr4 (488-542)||(6746689-6746743)
chr4 (488-535)||(8724775-8724822)
[»] scaffold0015 (2 HSPs)
scaffold0015 (487-542)||(29526-29581)
scaffold0015 (488-542)||(24211-24265)
[»] chr8 (4 HSPs)
chr8 (487-542)||(86508-86563)
chr8 (487-542)||(91825-91880)
chr8 (487-542)||(19802979-19803034)
chr8 (488-542)||(29010782-29010836)
[»] chr7 (4 HSPs)
chr7 (487-542)||(11716628-11716683)
chr7 (488-542)||(13167037-13167091)
chr7 (489-542)||(11711383-11711436)
chr7 (487-542)||(13160581-13160636)
[»] chr6 (5 HSPs)
chr6 (487-542)||(16777801-16777856)
chr6 (487-542)||(32703873-32703928)
chr6 (488-542)||(16772466-16772520)
chr6 (488-542)||(32708250-32708304)
chr6 (488-540)||(26243701-26243753)
[»] chr3 (11 HSPs)
chr3 (487-542)||(4100097-4100152)
chr3 (487-542)||(5383349-5383404)
chr3 (487-542)||(6806583-6806638)
chr3 (488-542)||(5378014-5378068)
chr3 (488-542)||(13719155-13719209)
chr3 (487-542)||(13723051-13723106)
chr3 (487-542)||(4099737-4099792)
chr3 (551-590)||(5378234-5378273)
chr3 (488-542)||(2185446-2185500)
chr3 (490-539)||(23619432-23619481)
chr3 (551-590)||(5383570-5383609)
[»] chr1 (16 HSPs)
chr1 (487-542)||(2797004-2797059)
chr1 (487-542)||(14471543-14471598)
chr1 (487-542)||(14476906-14476961)
chr1 (487-542)||(23200390-23200445)
chr1 (488-542)||(2790575-2790629)
chr1 (488-542)||(23202759-23202813)
chr1 (488-542)||(39170182-39170236)
chr1 (491-542)||(42375365-42375416)
chr1 (487-542)||(21010395-21010450)
chr1 (551-590)||(14471763-14471802)
chr1 (551-590)||(14477126-14477165)
chr1 (551-590)||(39169978-39170017)
chr1 (488-541)||(394763-394816)
chr1 (95-157)||(22381250-22381312)
chr1 (490-541)||(14632655-14632706)
chr1 (488-523)||(42377395-42377430)
[»] chr2 (2 HSPs)
chr2 (488-542)||(20925392-20925446)
chr2 (399-473)||(44046416-44046490)


Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 590
Target Start/End: Original strand, 656334 - 656906
Alignment:
Q  18 gttctatcgtcgcctaaacttccttccgctttg-tcgctgtttctttgcccataaaattgttttgcacagcactcaataggtatgttgtcgacattgtat 116  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  656334 gttctatcgtcgcctaaacttccttccgctttgatcgctctttctttgcccataaa-ttgttttgcacagcactcaataggtatgttatcgacatcgtat 656432  T
Q  117 catttttagttttctgccaacactgagactcaccattttttggtttctttcaatgttgggactccacgactgaatataatgtaattgtataaagccttca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  656433 catttttagttttctgccaacactgagactcaccattttttggtttctttcaatgttgggactccacggctgaatatggtgtaattgtataaagccttca 656532  T
Q  217 tgttagtaagtagttagttttcctatcatattttctcaagtgtccacacaacccatttctgtagtataaatggagtgtgtgaaagaaaatccatgaatgc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656533 tgttagtaagtagttagttttcctatcatattttctcaagtgtccacacaacccatttctgtagtataaatggagtgtgtgaaagaaaatccatgaatgc 656632  T
Q  317 aataattgaactcaaacttagtatatgctcaaatgagctgaaacttgaaattttctacaactctttcattgattgcaaagtattaccagggttctattgg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  656633 aataattgaactcaaacttagtatatgctcaaatgagctgaaacttgaaattttctacaactctttcattgattgcaaagtattaccagggttctgttgg 656732  T
Q  417 atggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaattacatacacaccatggctcagaaaccaagagagaattcactc 516  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  656733 atggagatccacagaatttactctttctgatctttgagcaagctttcgctgatcaaattacatacacaccatggctcagaaaccaagagagaatccactc 656832  T
Q  517 tctaactctcaaatgagaaactcaagnnnnnnnncaatgaggtaagggatgatgtaagtgaccttgagcctatg 590  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  656833 tctaactctcaaatgagaaactcaagttttttttcaatgaggtaagggatgatgtaagtgaccttgagcctatg 656906  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 483 - 542
Target Start/End: Complemental strand, 12843031 - 12842972
Alignment:
Q  483 caccatggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12843031 caccttggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 12842972  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 37022666 - 37022720
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37022666 tggctaagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 37022720  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 542
Target Start/End: Original strand, 24092098 - 24092149
Alignment:
Q  491 ctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  24092098 ctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 24092149  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 396 - 478
Target Start/End: Complemental strand, 3896167 - 3896085
Alignment:
Q  396 gtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaattaca 478  Q
    ||||||||| |||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  3896167 gtattaccatggttctgttggatgtagatccacagactttactctttctgatctttgcgcaagctttcgctgatcaaattaca 3896085  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 396 - 476
Target Start/End: Original strand, 3144996 - 3145076
Alignment:
Q  396 gtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaatta 476  Q
    ||||||||| |||||| ||||||| ||||||||| | || ||||||||||||||||| |||||||||||||||||||||||    
T  3144996 gtattaccatggttctgttggatgtagatccacagacttcactctttctgatctttgcgcaagctttcgctgatcaaatta 3145076  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 14027108 - 14027054
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14027108 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14027054  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 6746689 - 6746743
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  6746689 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaacgcaag 6746743  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 8724822 - 8724775
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaa 535  Q
    ||||||| || |||||||||||| |||| |||||||||||||||||||    
T  8724822 tggctcaaaagccaagagagaatccactatctaactctcaaatgagaa 8724775  T

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Target: scaffold0015 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 29526 - 29581
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29526 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 29581  T

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Target: scaffold0015; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 24211 - 24265
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24211 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 24265  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 86563 - 86508
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  86563 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 86508  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 91880 - 91825
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  91880 atggctcataaaccaagagagaatccactctctaactctcaaatgagaaactcaag 91825  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 19803034 - 19802979
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19803034 atggctcagaaaccaagagagaatccactctctaactctcaaattagaaactcaag 19802979  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 29010782 - 29010836
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  29010782 tggctcagaaatcaagagagaatccactctctaactctcaaatgagaaactcaag 29010836  T

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Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 11716683 - 11716628
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11716683 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11716628  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 13167091 - 13167037
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13167091 tggctcagaaatcaagagagaattcactctctaactctcaaatgagaaactcaag 13167037  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 489 - 542
Target Start/End: Complemental strand, 11711436 - 11711383
Alignment:
Q  489 ggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11711436 ggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11711383  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 13160636 - 13160581
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  13160636 atggctcagaaacgaagagagaatccactctctaactctcatatgagaaactcaag 13160581  T

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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 16777801 - 16777856
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16777801 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 16777856  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 32703928 - 32703873
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  32703928 atggctcagaaaccaagagagaatccactctataactctcaaatgagaaactcaag 32703873  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 16772466 - 16772520
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  16772466 tggctcagaaaccaatagagaatccactctctaactctcaaatgagaaactcaag 16772520  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 32708304 - 32708250
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  32708304 tggctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 32708250  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 540
Target Start/End: Complemental strand, 26243753 - 26243701
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactca 540  Q
    |||||||||||| ||||||||  ||| | ||||||||| ||||||||||||||    
T  26243753 tggctcagaaactaagagagacctcattttctaactcttaaatgagaaactca 26243701  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 4100152 - 4100097
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4100152 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 4100097  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 5383349 - 5383404
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5383349 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5383404  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 6806583 - 6806638
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6806583 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 6806638  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 5378014 - 5378068
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5378014 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5378068  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 13719155 - 13719209
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13719155 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 13719209  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 13723051 - 13723106
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  13723051 atggctcagaaaccaagagagaatccactctctaactatcaaatgagaaactcaag 13723106  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 4099737 - 4099792
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  4099737 atggctcataaaccaagagagaatccactctctaactctcaaaagagaaactcaag 4099792  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 590
Target Start/End: Original strand, 5378234 - 5378273
Alignment:
Q  551 caatgaggtaagggatgatgtaagtgaccttgagcctatg 590  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5378234 caatgaggtaagggatgatgtaagtgaccttgagcctatg 5378273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 2185500 - 2185446
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  2185500 tggctcagaaatcaagagagaatccattctctaactttcaaatgagaaactcaag 2185446  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 490 - 539
Target Start/End: Complemental strand, 23619481 - 23619432
Alignment:
Q  490 gctcagaaaccaagagagaattcactctctaactctcaaatgagaaactc 539  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  23619481 gctcagaaaccaagagagaatccactctattactctcaaatgagaaactc 23619432  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 590
Target Start/End: Original strand, 5383570 - 5383609
Alignment:
Q  551 caatgaggtaagggatgatgtaagtgaccttgagcctatg 590  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  5383570 caatgaggtaagggatgatgtaagtgaccttgagcttatg 5383609  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 2797004 - 2797059
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2797004 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2797059  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 14471543 - 14471598
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14471543 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14471598  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 14476906 - 14476961
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14476906 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14476961  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 23200445 - 23200390
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23200445 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23200390  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 2790575 - 2790629
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2790575 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2790629  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 23202813 - 23202759
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23202813 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23202759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 39170236 - 39170182
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39170236 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 39170182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 491 - 542
Target Start/End: Complemental strand, 42375416 - 42375365
Alignment:
Q  491 ctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42375416 ctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 42375365  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 487 - 542
Target Start/End: Original strand, 21010395 - 21010450
Alignment:
Q  487 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  21010395 atggctcagaaaccaagagagtatccactctctaactctgaaatgagaaactcaag 21010450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 590
Target Start/End: Original strand, 14471763 - 14471802
Alignment:
Q  551 caatgaggtaagggatgatgtaagtgaccttgagcctatg 590  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14471763 caatgaggtaagggatgatgtaagtgaccttgagcctatg 14471802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 590
Target Start/End: Original strand, 14477126 - 14477165
Alignment:
Q  551 caatgaggtaagggatgatgtaagtgaccttgagcctatg 590  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14477126 caatgaggtaagggatgatgtaagtgaccttgagcctatg 14477165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 551 - 590
Target Start/End: Complemental strand, 39170017 - 39169978
Alignment:
Q  551 caatgaggtaagggatgatgtaagtgaccttgagcctatg 590  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39170017 caatgaggtaagggatgatgtaagtgaccttgagcctatg 39169978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 488 - 541
Target Start/End: Original strand, 394763 - 394816
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaa 541  Q
    ||||||||||| |||||||||||||||||| ||| | |||||||||||||||||    
T  394763 tggctcagaaatcaagagagaattcactctgtaattttcaaatgagaaactcaa 394816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 22381250 - 22381312
Alignment:
Q  95 aggtatgttgtcgacattgtatcatttttagttttctgccaacactgagactcaccatttttt 157  Q
    |||||||||| ||| || ||||| |||||||||||||||||||||| | ||| ||||||||||    
T  22381250 aggtatgttgccgatatcgtatcgtttttagttttctgccaacactaatacttaccatttttt 22381312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 541
Target Start/End: Original strand, 14632655 - 14632706
Alignment:
Q  490 gctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaa 541  Q
    ||||| |||| |||||||||| |||||| ||||| |||||||||||||||||    
T  14632655 gctcataaacgaagagagaatccactctttaactttcaaatgagaaactcaa 14632706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 523
Target Start/End: Complemental strand, 42377430 - 42377395
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaact 523  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42377430 tggctcagaaaccaagagagaatccactctctaact 42377395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 20925392 - 20925446
Alignment:
Q  488 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 542  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20925392 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 20925446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 473
Target Start/End: Complemental strand, 44046490 - 44046416
Alignment:
Q  399 ttaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaa 473  Q
    |||||| |||||  ||||||| ||||||||| | || |||||||||||||| || |||||||| |||||||||||    
T  44046490 ttaccatggttcagttggatgtagatccacacatttcactctttctgatctctgcgcaagcttacgctgatcaaa 44046416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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