View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18688_low_2 (Length: 410)

Name: NF18688_low_2
Description: NF18688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18688_low_2
NF18688_low_2
[»] chr4 (26 HSPs)
chr4 (2-394)||(55505174-55505567)
chr4 (124-394)||(640672-640948)
chr4 (168-334)||(553283-553449)
chr4 (171-333)||(546720-546882)
chr4 (124-334)||(6006087-6006297)
chr4 (196-333)||(1524613-1524750)
chr4 (202-331)||(1545611-1545740)
chr4 (134-264)||(1600301-1600431)
chr4 (195-333)||(1552900-1553038)
chr4 (248-333)||(566073-566158)
chr4 (200-333)||(1489491-1489624)
chr4 (200-332)||(12121588-12121720)
chr4 (200-332)||(1513535-1513667)
chr4 (124-332)||(1537898-1538106)
chr4 (124-330)||(1548557-1548763)
chr4 (197-330)||(370760-370886)
chr4 (195-316)||(570182-570303)
chr4 (267-331)||(1508135-1508199)
chr4 (267-331)||(7226015-7226079)
chr4 (196-240)||(7226106-7226150)
chr4 (124-303)||(1528363-1528542)
chr4 (174-229)||(3438797-3438852)
chr4 (283-333)||(53761899-53761949)
chr4 (275-332)||(644742-644799)
chr4 (196-241)||(8187313-8187358)
chr4 (196-240)||(659540-659584)
[»] chr1 (6 HSPs)
chr1 (131-317)||(43633964-43634132)
chr1 (312-394)||(43634858-43634940)
chr1 (124-391)||(9580840-9581099)
chr1 (7-53)||(43995816-43995862)
chr1 (124-177)||(9586422-9586475)
chr1 (353-394)||(9586631-9586672)
[»] chr3 (4 HSPs)
chr3 (179-394)||(51113847-51114065)
chr3 (197-330)||(514861-514994)
chr3 (197-333)||(51121023-51121159)
chr3 (278-333)||(13470862-13470917)
[»] chr8 (6 HSPs)
chr8 (127-333)||(32151064-32151270)
chr8 (198-330)||(5767788-5767920)
chr8 (198-330)||(14002887-14003019)
chr8 (174-332)||(17628145-17628303)
chr8 (192-330)||(27922336-27922474)
chr8 (272-333)||(44736443-44736504)
[»] chr2 (1 HSPs)
chr2 (196-387)||(45245158-45245352)
[»] chr6 (12 HSPs)
chr6 (285-392)||(19632360-19632470)
chr6 (273-332)||(6426420-6426479)
chr6 (127-254)||(9411118-9411245)
chr6 (276-331)||(10579869-10579924)
chr6 (276-334)||(14820605-14820663)
chr6 (276-333)||(6603332-6603389)
chr6 (199-319)||(28934884-28935004)
chr6 (278-333)||(6415880-6415935)
chr6 (279-333)||(14818297-14818351)
chr6 (276-333)||(6394776-6394833)
chr6 (285-333)||(6585367-6585415)
chr6 (289-333)||(6589453-6589497)
[»] chr7 (3 HSPs)
chr7 (285-334)||(10170210-10170259)
chr7 (285-334)||(10177735-10177784)
chr7 (276-333)||(15092281-15092338)
[»] chr5 (1 HSPs)
chr5 (196-304)||(41889720-41889828)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 2 - 394
Target Start/End: Complemental strand, 55505567 - 55505174
Alignment:
Q  2 gttgtatatgcggatagttttaaatatacgattctatgataattttttatttnnnnnnnnn-ttctcatggaaatagatccgaaaacaaaaacatcttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  55505567 gttgtatatgcggatagttttaaatatacgattctatgataattttttatttaaaaaaaaaattctcatggaaatagatccgaaaacaaaaacatcttac 55505468  T
Q  101 acttcatagctaagtacttttagagcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55505467 acttcatagctaagtacttttagagcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatc 55505368  T
Q  201 tttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagtttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55505367 tttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagtttt 55505268  T
Q  301 ctaacacgtgtttcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgt 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  55505267 ctaacacgtgtttcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtccacgacaattctttgaggtcacataaagtgt 55505174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 124 - 394
Target Start/End: Original strand, 640672 - 640948
Alignment:
Q  124 agcaaacaatgcatccttgacgcaagaagag---tttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttga 220  Q
    ||||||||  |||||||||||||||||| ||   |||||||| || |||  |||||| |||||||||||| | |  ||||||||||||||||||||||||    
T  640672 agcaaacatggcatccttgacgcaagaatagaagtttcttctctttgtcgttcaaatcaaaaccaggtggagttactatctttctcaatgatggccttga 640771  T
Q  221 aaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactccc 320  Q
    |||||||||||||||||| ||  |||||| |||||||| |||||| || || |||| |||||||| || | |||||||||||| ||| || |||||||||    
T  640772 aaataccattgagtcaacgacattagcattcactttattacaaccctttaaattgacctctcttaattctttgcagttttctaccacatgattcactccc 640871  T
Q  321 ttctctgtgac---atcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgt 394  Q
    |||| ||| ||   ||  | || || || ||||| ||||||||| || || ||||||||||||||||| || |||||    
T  640872 ttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgt 640948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 334
Target Start/End: Original strand, 553283 - 553449
Alignment:
Q  168 tcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgt 267  Q
    |||||||||| |||||||||||| |||  ||||||||||||||||| || ||||  |||||||||| |||||||  | ||||||||||||||||||||      
T  553283 tcactcaaatcaaaaccaggtggagctcctatctttctcaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaacccc 553382  T
Q  268 tcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatc 334  Q
     ||| | ||||||||| ||||||||||||||||||| ||| || |||||||| || |||||||||||    
T  553383 ccaaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatc 553449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 171 - 333
Target Start/End: Original strand, 546720 - 546882
Alignment:
Q  171 ctcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttca 270  Q
    |||||||  ||||||| ||| ||| ||||||||||||||||||||||| |||||| ||||||  ||||  |  || ||| |||||||| |||| |  | |    
T  546720 ctcaaatccaaaccagatggagctattatctttctcaatgatggccttaaaaataacattgaagcaacggcattaacattcactttattacaagccctta 546819  T
Q  271 agttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    | |||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||    
T  546820 aattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacat 546882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 334
Target Start/End: Original strand, 6006087 - 6006297
Alignment:
Q  124 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 223  Q
    ||||||||| |||||| |||||||||||||||||   |||   ||||||  ||  |||||||||||| || ||||||||||||||||||||||||| |||    
T  6006087 agcaaacaaggcatccatgacgcaagaagagttttcgcttgctgtcactacaacaaaaaccaggtggagcagttatctttctcaatgatggccttgtaaa 6006186  T
Q  224 taccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttc 323  Q
    ||||||  ||||||||||   |||   |||||||| |||| | | ||| || |||||||| | |||| ||||||||||||  || ||  |||||||||||    
T  6006187 taccatcaagtcaacaacatcagctaccactttatgacaatcctgcaaatttatctctctcaattgtttgcagttttctacgacttgcatcactcccttc 6006286  T
Q  324 tctgtgacatc 334  Q
    | |||||||||    
T  6006287 tttgtgacatc 6006297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 196 - 333
Target Start/End: Complemental strand, 1524750 - 1524613
Alignment:
Q  196 ttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 295  Q
    |||||| |||||||||||| ||||| |||| ||||||| ||||||  |||||||| ||||||  ||||||  |||| || |||||||| |||||||||||    
T  1524750 ttatctctctcaatgatggtcttgataatagcattgaggcaacaaagctagcatgaactttacaacaacccctcaaattaatctctctcagttgtgtgca 1524651  T
Q  296 gttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    |||||||| ||| |  ||||||||| ||||||||||||    
T  1524650 gttttctatcacataattcactcccctctctgtgacat 1524613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 331
Target Start/End: Original strand, 1545611 - 1545740
Alignment:
Q  202 ttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttc 301  Q
    ||||||||||||||||||| ||||| | | |  ||| |||  ||||||||||||||||||||||  |||| |||||| |||||||||||||||||||||     
T  1545611 ttctcaatgatggccttgataatactaataaagcaataacattagcatgcactttatcacaacccctcaaattgatcactcttagttgtgtgcagttttt 1545710  T
Q  302 taacacgtgtttcactcccttctctgtgac 331  Q
    || | | | |||||||||||||| ||||||    
T  1545711 taccgcatctttcactcccttctatgtgac 1545740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 264
Target Start/End: Original strand, 1600301 - 1600431
Alignment:
Q  134 gcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgag 233  Q
    |||||| |||| | |||||| |||| | ||||||||||||||| ||||| ||||||| |||| |||||||||||| ||||||||| ||| |||||| |||    
T  1600301 gcatccatgactcgagaagaatttcctattttcgtcactcaaaggaaaatcaggtggagctgctatctttctcaaggatggccttaaaagtaccatcgag 1600400  T
Q  234 tcaacaactctagcatgcactttatcacaac 264  Q
     |||||||  |||||| ||||| || |||||    
T  1600401 acaacaaccttagcattcacttcatgacaac 1600431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 333
Target Start/End: Complemental strand, 1553038 - 1552900
Alignment:
Q  195 gttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgc 294  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||   |  || |||||||  |||||| ||||| |||||||||||||||||   ||    
T  1553038 gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttgcaagc 1552939  T
Q  295 agttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    | ||||||   || || |||||||||||||| |||||||    
T  1552938 aattttctccgacatgcttcactcccttctcggtgacat 1552900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 566073 - 566158
Alignment:
Q  248 atgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    ||||||||||| |||||| | ||| ||||| ||||| ||||||||||||||||| | || ||||||||||||||||||||| ||||    
T  566073 atgcactttataacaaccctccaacttgatttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacat 566158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 333
Target Start/End: Complemental strand, 1489624 - 1489491
Alignment:
Q  200 ctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttt 299  Q
    |||||| || |||||||||||||||| || |||| ||| |||   | ||||||||| | ||||    ||||| ||||||||||||||||||| ||| |||    
T  1489624 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatctctcttagttgtgcgcatttt 1489525  T
Q  300 tctaacacgtgtttcactcccttctctgtgacat 333  Q
    |||| ||| || ||||||||||||||||||||||    
T  1489524 tctagcacatgcttcactcccttctctgtgacat 1489491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 332
Target Start/End: Complemental strand, 12121720 - 12121588
Alignment:
Q  200 ctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttt 299  Q
    |||||||||||||||||||||||||| || |||| ||| |||   |  |||||||| |  ||||   ||||| | ||||||||||||||||||||| |||    
T  12121720 ctttctcaatgatggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttt 12121621  T
Q  300 tctaacacgtgtttcactcccttctctgtgaca 332  Q
    |||| ||| || ||||||||| |||||||||||    
T  12121620 tctaccacatgcttcactcccatctctgtgaca 12121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 332
Target Start/End: Complemental strand, 1513667 - 1513535
Alignment:
Q  200 ctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttt 299  Q
    |||||| || |||||||||||||||| || |||| ||| |||   | ||| |||||||  ||||   ||||| ||||||||||| ||||||||||| |||    
T  1513667 ctttcttaacgatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttt 1513568  T
Q  300 tctaacacgtgtttcactcccttctctgtgaca 332  Q
    |||| |||  | ||||||||| |||||||||||    
T  1513567 tctagcacaagcttcactcccatctctgtgaca 1513535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 332
Target Start/End: Complemental strand, 1538106 - 1537898
Alignment:
Q  124 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 223  Q
    ||||||||||||||||||||||  | ||||||| | | | |  ||| || ||| || |||||  ||| | ||||| |||||| || ||||||||||||||    
T  1538106 agcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaacgatggccttgaaaa 1538007  T
Q  224 taccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttc 323  Q
    || || ||||  || |||   | ||| ||||| | |||| |  ||||| ||||||||||||||||| ||||| ||||||| ||| |  ||||||||||||    
T  1538006 tatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctcttagttgagtgcatttttctagcacatacttcactcccttc 1537907  T
Q  324 tctgtgaca 332  Q
    | |||||||    
T  1537906 tgtgtgaca 1537898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 330
Target Start/End: Complemental strand, 1548763 - 1548557
Alignment:
Q  124 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 223  Q
    |||||||||  ||||||||| || ||||||||| | |||    |||||| |||||| ||  || ||| | ||||||||||||||||||||| ||||||||    
T  1548763 agcaaacaagacatccttgatgcgagaagagttccatctcagtgtcactaaaatgacaaagagctggagttgttatctttctcaatgatggtcttgaaaa 1548664  T
Q  224 taccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttc 323  Q
    ||||| |||  | |||||   | |||||| || |  |||||| | ||| || || ||||| ||||| | ||||||||||   |  |||||||||||||||    
T  1548663 taccaatgaagcgacaacatcatcatgcaattgaaaacaaccttccaaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttc 1548564  T
Q  324 tctgtga 330  Q
    |||||||    
T  1548563 tctgtga 1548557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 330
Target Start/End: Original strand, 370760 - 370886
Alignment:
Q  197 tatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctctta-gttgtgtgca 295  Q
    ||||||||| |||||||||||||||||||||||||||         |||  ||||||||||| ||||||| | || ||||||||||| | ||||||||||    
T  370760 tatctttctgaatgatggccttgaaaataccattgag--------gctataatgcactttattacaaccgcttaaattgatctctctcaggttgtgtgca 370851  T
Q  296 gttttctaacacgtgtttcactcccttctctgtga 330  Q
    |||||  | ||| || ||||||||| ||| |||||    
T  370852 gtttttcaccacatgcttcactcccatctttgtga 370886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 316
Target Start/End: Original strand, 570182 - 570303
Alignment:
Q  195 gttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgc 294  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||||||   |   |||||||||||  ||    ||||| |||||||| || ||||||||||    
T  570182 gttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagttgtgtgc 570281  T
Q  295 agttttctaacacgtgtttcac 316  Q
    ||||||||| ||| || |||||    
T  570282 agttttctaccacatgattcac 570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 1508199 - 1508135
Alignment:
Q  267 ttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac 331  Q
    ||||| ||||||||||||||||||||||| ||||||| | | || ||||||||| |||| |||||    
T  1508199 ttcaaattgatctctcttagttgtgtgcatttttctagcgcatgcttcactcccatctcggtgac 1508135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 7226079 - 7226015
Alignment:
Q  267 ttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac 331  Q
    ||||| ||||||||||| |||||  |||||||||||| |||||| |||| ||||||||| |||||    
T  7226079 ttcaaattgatctctctcagttgcttgcagttttctaccacgtgcttcaatcccttctcggtgac 7226015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 7226150 - 7226106
Alignment:
Q  196 ttatctttctcaatgatggccttgaaaataccattgagtcaacaa 240  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||    
T  7226150 ttatctttctcaatgatggccttgaagaaaccattgaggcaacaa 7226106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 303
Target Start/End: Complemental strand, 1528542 - 1528363
Alignment:
Q  124 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 223  Q
    ||||||||| |||||| ||||||||||  | ||||  ||||  ||||||  ||||||||| ||| || ||   ||||||||| | ||| | ||||  |||    
T  1528542 agcaaacaaggcatccatgacgcaagataaatttccgctttctgtcactacaatgaaaacaaggcggagccactatctttctaagtgacgaccttataaa 1528443  T
Q  224 taccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttcta 303  Q
    ||||||||| | ||||||   ||||  |||||||  |||||| | ||| || |||||||| |||||||||||||||||||    
T  1528442 taccattgatttaacaacatcagcaaccactttacaacaaccctgcaaatttatctctctcagttgtgtgcagttttcta 1528363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 3438852 - 3438797
Alignment:
Q  174 aaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccat 229  Q
    |||||| ||| |||||| || |||| |||||||||||||||| |||||||||||||    
T  3438852 aaatgataacgaggtggagcagttacctttctcaatgatggctttgaaaataccat 3438797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 53761949 - 53761899
Alignment:
Q  283 ttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    ||||||||||||||||||||  ||| |||||||||||||| || |||||||    
T  53761949 ttagttgtgtgcagttttcttccacatgtttcactcccttgtccgtgacat 53761899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 644742 - 644799
Alignment:
Q  275 gatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgaca 332  Q
    ||||||||| ||||||||||| ||||| | ||| ||||||||||| ||||| ||||||    
T  644742 gatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 8187358 - 8187313
Alignment:
Q  196 ttatctttctcaatgatggccttgaaaataccattgagtcaacaac 241  Q
    ||||||||||||  |||||||||||||||| ||| |||||||||||    
T  8187358 ttatctttctcagcgatggccttgaaaatatcatcgagtcaacaac 8187313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 659540 - 659584
Alignment:
Q  196 ttatctttctcaatgatggccttgaaaataccattgagtcaacaa 240  Q
    |||||||| |||| |||||||||||||||||||| ||| ||||||    
T  659540 ttatctttttcaacgatggccttgaaaataccatcgaggcaacaa 659584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 131 - 317
Target Start/End: Original strand, 43633964 - 43634132
Alignment:
Q  131 aatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccatt 230  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  43633964 aatgcatccttgatgcaagaagagtttcttctttttgtcactcaaatgaaaacgaggtggcgctattatctttctcaatgatggccttgaaaataccatt 43634063  T
Q  231 gagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcact 317  Q
    |||                  ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||    
T  43634064 gag------------------actttatcacaaccgttcaagttgatctctcttagttgtctgcaattttctaacacgtgcttcact 43634132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 312 - 394
Target Start/End: Original strand, 43634858 - 43634940
Alignment:
Q  312 ttcactcccttctctgtgacatcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaagtgt 394  Q
    ||||||||||||||||||||||| ||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  43634858 ttcactcccttctctgtgacatcactattattcagtaacaaattcaaaagtccacgacaattctttgaggtcacataaagtgt 43634940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 391
Target Start/End: Original strand, 9580840 - 9581099
Alignment:
Q  124 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa 223  Q
    ||||||||||||||||||||| | |||||| ||||||||||  ||||||||||| |            ||| ||||||||||||| |||||||||||| |    
T  9580840 agcaaacaatgcatccttgacacgagaagattttcttctttctgtcactcaaataa-----------tgctattatctttctcaacgatggccttgaaga 9580928  T
Q  224 taccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttc 323  Q
    |||||||||   ||| || |||  ||||||||||| ||||||  |||| |  ||||||   ||||||||||| ||||||| |||  | |||||||| ||     
T  9580929 taccattgacgaaaccacactacgatgcactttataacaacccctcaaatcaatctcttccagttgtgtgcaattttctaccacacgcttcactccattg 9581028  T
Q  324 tctgtga---catcgctatttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacataaag 391  Q
    | |||||   |||  |||| ||||| ||| |    ||||||||| ||||||||||||||| ||||||||||    
T  9581029 tttgtgacaccataactatctttcagtaaaaggcacaaaagtccacgacaattctttgagatcacataaag 9581099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 43995862 - 43995816
Alignment:
Q  7 atatgcggatagttttaaatatacgattctatgataattttttattt 53  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||    
T  43995862 atatgcggatagttttaaatatacgattgtatgatgattttttattt 43995816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 9586422 - 9586475
Alignment:
Q  124 agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaat 177  Q
    ||||||||||||||||||||| | ||||| |||||||||||  |||||||||||    
T  9586422 agcaaacaatgcatccttgacacgagaagggtttcttctttctgtcactcaaat 9586475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 9586631 - 9586672
Alignment:
Q  353 atgcaaaagtcctcgacaattctttgaggtcacataaagtgt 394  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  9586631 atgcaaaagtccacgacaattcattgaggtcacataaagtgt 9586672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 179 - 394
Target Start/End: Complemental strand, 51114065 - 51113847
Alignment:
Q  179 aaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatc 278  Q
    |||||||||||| |||||||| | ||||||||||||||||||||||| ||||||| ||||||   ||||||||||||||  |||||| || || || |||    
T  51114065 aaaaccaggtggagctgttatttctctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatc 51113966  T
Q  279 tctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcg---ctatttttcaataacaaatgcaaaagtcctcgacaattct 375  Q
    |||||||||| |||||| ||||||| ||| || |||||||||||||||||||||| |   | |||||||| |||||  |||||||| || | |||| |||    
T  51113965 tctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactct 51113866  T
Q  376 ttgaggtcacataaagtgt 394  Q
    | ||| ||||||| |||||    
T  51113865 tcgagatcacatagagtgt 51113847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 330
Target Start/End: Complemental strand, 514994 - 514861
Alignment:
Q  197 tatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcag 296  Q
    ||||||||||||||||||||||||||||||||||| | |||||||  ||  ||||||||||| ||||||  | || ||||||||||| ||| ||||||||    
T  514994 tatctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcagtcgtgtgcag 514895  T
Q  297 ttttctaacacgtgtttcactcccttctctgtga 330  Q
    ||||  | ||| || ||||||||| |||||||||    
T  514894 tttttcaccacatgcttcactcccgtctctgtga 514861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 333
Target Start/End: Complemental strand, 51121159 - 51121023
Alignment:
Q  197 tatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcag 296  Q
    |||||||||||| |||| ||||||||| || |||||| ||||||    |||||| |||||||  |||    ||||||||||| |||| | ||||||||||    
T  51121159 tatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaattgtgtgcag 51121060  T
Q  297 ttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    ||||||| ||| ||||||||||| || | ||||||||    
T  51121059 ttttctaccacatgtttcactcctttttgtgtgacat 51121023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 333
Target Start/End: Complemental strand, 13470917 - 13470862
Alignment:
Q  278 ctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    ||||||||| ||||||||||| |||| ||| |||||||||||||  ||||||||||    
T  13470917 ctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacat 13470862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 127 - 333
Target Start/End: Original strand, 32151064 - 32151270
Alignment:
Q  127 aaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaatac 226  Q
    |||||| |||||| |||||||||||||||||| | |||| |||||| |||| | ||| |||||| || ||||||||||||||||||||||||||||||||    
T  32151064 aaacaaggcatccatgacgcaagaagagtttcctttttttgtcactgaaatcataacgaggtggagcagttatctttctcaatgatggccttgaaaatac 32151163  T
Q  227 cattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctct 326  Q
    ||||   |||||||    ||||||||||| |||||||||  | || |||||||| || |||||| | |||||||    ||| || ||||| |||||||||    
T  32151164 cattttatcaacaatatcagcatgcacttgatcacaaccccttaaattgatctccctcagttgtatacagtttttcctcacatgcttcacccccttctct 32151263  T
Q  327 gtgacat 333  Q
    |||||||    
T  32151264 gtgacat 32151270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 330
Target Start/End: Complemental strand, 5767920 - 5767788
Alignment:
Q  198 atctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagt 297  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||| |||| ||||| |||  ||| || | ||| || |||||||| |||||||||||||    
T  5767920 atctttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccatccaaatttatctctctgagttgtgtgcagt 5767821  T
Q  298 tttctaacacgtgtttcactcccttctctgtga 330  Q
    | | || ||||||  | |||||||| |||||||    
T  5767820 tgtttaccacgtgcatgactcccttgtctgtga 5767788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 330
Target Start/End: Original strand, 14002887 - 14003019
Alignment:
Q  198 atctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagt 297  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||| |||| ||||| |||  ||| || |||||  | |||||||| ||||| |||||||    
T  14002887 atctttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagt 14002986  T
Q  298 tttctaacacgtgtttcactcccttctctgtga 330  Q
    | | || ||||||  | |||||||| |||||||    
T  14002987 tgtttaccacgtgcatgactcccttgtctgtga 14003019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 17628303 - 17628145
Alignment:
Q  174 aaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagt 273  Q
    |||||| |||||||||| ||  ||||||||||||||| |||||||| |||||||||   ||||||||   |||| | ||||| || ||||||  | ||      
T  17628303 aaatgataaccaggtggggcaattatctttctcaatgttggccttgcaaataccatcatgtcaacaatattagctttcacttcataacaaccccttaaac 17628204  T
Q  274 tgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgaca 332  Q
    ||||||| || || |||||||||||||  ||||| || ||||||||||| |||||||||    
T  17628203 tgatctccctcagctgtgtgcagtttttcaacacatgcttcactcccttgtctgtgaca 17628145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 330
Target Start/End: Original strand, 27922336 - 27922474
Alignment:
Q  192 gctgttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtg 291  Q
    |||||||||| |||||| |||||||||||| ||||||| ||   |||||   ||||||| ||||||| |||||| | |||  | |||| ||| ||||| |    
T  27922336 gctgttatctgtctcaacgatggccttgaagataccatcgaagaaacaatattagcatgtactttatgacaaccatccaaactaatctttctcagttgag 27922435  T
Q  292 tgcagttttctaacacgtgtttcactcccttctctgtga 330  Q
    |||||||||||| ||| || ||||||||||||| |||||    
T  27922436 tgcagttttctaccacatggttcactcccttctttgtga 27922474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 44736443 - 44736504
Alignment:
Q  272 gttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    ||||||||||||||||||||| || |||||||  || |||||||||||||||  ||||||||    
T  44736443 gttgatctctcttagttgtgtacaattttctacaacatgtttcactcccttcgttgtgacat 44736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 387
Target Start/End: Complemental strand, 45245352 - 45245158
Alignment:
Q  196 ttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 295  Q
    |||||||| |||| |||||||||||||||||||| ||| ||| |||  |||||||||||| |   ||     |||| ||||||||| | |||||||||||    
T  45245352 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 45245253  T
Q  296 gttttctaacacgtgtttcactcccttctctgtgacatcgcta----tttttcaataacaaatgcaaaagtcctcgacaattctttgaggtcacat 387  Q
     ||||||| ||| |||||||||||||| |||||||||| | ||    ||||||||||| |  |||||||| || |||||| |||||||| ||||||    
T  45245252 attttctaccacatgtttcactcccttatctgtgacat-gataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacat 45245158  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 392
Target Start/End: Original strand, 19632360 - 19632470
Alignment:
Q  285 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat---cgctatttttcaataacaaatgcaaaagtcctcgacaattctttgagg 381  Q
    |||||| |||||||||||| |||||||||||||||||||||||||| ||   | | |||||||| ||| |  |||||||| || | |||||||||||||     
T  19632360 agttgtttgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgaga 19632459  T
Q  382 tcacataaagt 392  Q
    ||||| |||||    
T  19632460 tcacaaaaagt 19632470  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 6426420 - 6426479
Alignment:
Q  273 ttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgaca 332  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||| ||||||  |||||||    
T  6426420 ttgatctttcttagttgtgtgcagttttctaccacttgtttcacacccttcattgtgaca 6426479  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 9411118 - 9411245
Alignment:
Q  127 aaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaatac 226  Q
    |||||| |||||| | ||||||||||||||   | |||| |  || ||||| |||||||||||| | | ||||||| |||||||| ||||||||||||||    
T  9411118 aaacaaggcatccattacgcaagaagagttctctatttttggaacacaaatcaaaaccaggtggagtttttatcttgctcaatgacggccttgaaaatac 9411217  T
Q  227 cattgagtcaacaactctagcatgcact 254  Q
    |||   ||||||||   |||||||||||    
T  9411218 catatcgtcaacaatattagcatgcact 9411245  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 10579924 - 10579869
Alignment:
Q  276 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgac 331  Q
    |||||||| ||||||||||||||||||| ||| ||||| |||||||||| ||||||    
T  10579924 atctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgac 10579869  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 14820605 - 14820663
Alignment:
Q  276 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatc 334  Q
    |||||||| || ||||||||||||| || ||| |||||||| |||||||||||||||||    
T  14820605 atctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatc 14820663  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 6603389 - 6603332
Alignment:
Q  276 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    |||| ||| |||||| |||||||||||| ||| ||||||||||| |||||||||||||    
T  6603389 atctttctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacat 6603332  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 319
Target Start/End: Original strand, 28934884 - 28935004
Alignment:
Q  199 tctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagtt 298  Q
    ||||||||||||||| |||||  ||||| | |||| | || |   ||| |||||||||| ||||| | | ||| | ||||||||||||||||||||| ||    
T  28934884 tctttctcaatgatgaccttggtaatactagtgaggctaccaaattaggatgcactttaacacaatcatccaaatagatctctcttagttgtgtgcaatt 28934983  T
Q  299 ttctaacacgtgtttcactcc 319  Q
    ||||| ||| || ||||||||    
T  28934984 ttctaccacatgcttcactcc 28935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 6415880 - 6415935
Alignment:
Q  278 ctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||   ||||||||||    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacat 6415935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 14818297 - 14818351
Alignment:
Q  279 tctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    ||||| || ||||||||||||||||  || |||||||| ||||||||||||||||    
T  14818297 tctctcagctgtgtgcagttttctactacatgtttcacacccttctctgtgacat 14818351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 6394776 - 6394833
Alignment:
Q  276 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    |||||||| | ||||||||||||||||| ||| |||| ||| ||||| ||||||||||    
T  6394776 atctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacat 6394833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 6585415 - 6585367
Alignment:
Q  285 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    |||||||||||  |||||| ||| ||||||| |||||||||||||||||    
T  6585415 agttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacat 6585367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 6589497 - 6589453
Alignment:
Q  289 gtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    ||||||||||||||| ||| ||||||||||||| ||| |||||||    
T  6589497 gtgtgcagttttctaccacatgtttcactccctcctccgtgacat 6589453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 10170259 - 10170210
Alignment:
Q  285 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatc 334  Q
    ||||||| ||||||||||  ||| ||||||||||| ||||||||||||||    
T  10170259 agttgtgagcagttttctttcacatgtttcactcctttctctgtgacatc 10170210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 10177784 - 10177735
Alignment:
Q  285 agttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatc 334  Q
    ||||||| ||||||||||  ||| ||||||||||| ||||||||||||||    
T  10177784 agttgtgagcagttttctttcacatgtttcactcctttctctgtgacatc 10177735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 333
Target Start/End: Complemental strand, 15092338 - 15092281
Alignment:
Q  276 atctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacat 333  Q
    |||||||| | ||||||||||||||||| ||| ||||||||||||   ||||||||||    
T  15092338 atctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacat 15092281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 304
Target Start/End: Complemental strand, 41889828 - 41889720
Alignment:
Q  196 ttatctttctcaatgatggccttgaaaataccattgagtcaacaactctagcatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgca 295  Q
    ||||||||||||||||  |||||||| ||||||||||| | |||||  || |||  ||||||| |||||| | |||  |||||  ||| ||||| |||||    
T  41889828 ttatctttctcaatgacagccttgaagataccattgaggccacaacattaccatttactttatgacaaccatccaaactgatcattctcagttgcgtgca 41889729  T
Q  296 gttttctaa 304  Q
    ||| |||||    
T  41889728 gttctctaa 41889720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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