View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_high_1 (Length: 836)
Name: NF18689_high_1
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 711; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 1 - 802
Target Start/End: Original strand, 55930300 - 55931101
Alignment:
| Q |
1 |
ttggagaagatgtacatgtctgtgatgagatttacagcaatggtggtgtggttttgccccataaggagtttaagtcgaatattctgaagccagagattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
55930300 |
ttggagaagatgtacatgtctgtgatgagatttacagcaatggtggtgtggttttgccccataaggagattaagtcgaatattctgaagccagagattgt |
55930399 |
T |
|
| Q |
101 |
catgtatggtcaatgttgcttggcatgtggtgaggaggtagtaatttattgagtggtgaggaaatatgtttgnnnnnnnnnnnnnnnnncttcaccccat |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
55930400 |
catgtaaggtcaatgttgcttggcatgtggtgaggaggtagtaatttattgagtggtgaggaaatatgtttgttttcattttattttttcttcaccccat |
55930499 |
T |
|
| Q |
201 |
tgcctttctccctgcagtgttcaagtcagtttttggattagattgagtgatgacactacaatgttgaaaggtcataatctttgtataaatttggtcttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55930500 |
tgcctttctccctgcagtgttcaagtcagtttttggattagattgagtgatgacactacaatgttgaaaggtcataatctttgtataaatttggtcttct |
55930599 |
T |
|
| Q |
301 |
gtgcaaaagttgtgtaattttaatttttgtacagaaatacattatcaattagttggttctattaaatctttacaattcattaattgagcaatctaattta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55930600 |
gtgcaaaagttgtgtaattttaatttttgtacagaaatacattatcaattagttggttctattaaatctttacaattcattaattgagcaatctaattta |
55930699 |
T |
|
| Q |
401 |
attcatgaatggttgttttatacacgatgaccgatctttccggccttttggtgttgtgatgggtgccaatgttgctattgatcacaagactggattgagt |
500 |
Q |
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| T |
55930700 |
attcatgaatggttgttttatacacgatgaccgatctttccggccttttggtgttgtgacgggtgccaatgttgctattgatcacaagactggattgagt |
55930799 |
T |
|
| Q |
501 |
aggggttttggctttgtcatttgttagcagagaagatgctcagagggctattaacaaactcaatgggtattgcttcaagaatctcttcaatatgttttaa |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55930800 |
aggggttttggctttgtcatttgttagcagagaagatgctcagagggctattaacaaactcaatgggtattgcttcaagaatctcttcaatatgttttaa |
55930899 |
T |
|
| Q |
601 |
gggcgacccaaagaacaacctaagtataaatattggctgcttttgagtannnnnnnnattgcccccctttttcttctttgaatatttgtagcaataatct |
700 |
Q |
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| T |
55930900 |
gggcgacccaaagaacaacctaagtataaatattggctgcttttgagtattttttttattgcccccctttttcttctttgaatatttgtagcaataatct |
55930999 |
T |
|
| Q |
701 |
gagttctggaccatttgtttactgtacctatttgtttatgttaaatgacagtttactctttcgaagaaatgtgtgagaagatgcatgatatgaaactttg |
800 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55931000 |
gagttctggaccatttgtttactgtacctatgtgtttatgttaaatgacagtttactctttcgaagaaatgtgtgagaagatgcatgatatgaaactttg |
55931099 |
T |
|
| Q |
801 |
ag |
802 |
Q |
| |
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|| |
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|
| T |
55931100 |
ag |
55931101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 34586145 - 34586301
Alignment:
| Q |
1 |
ttggagaagatgtacatgtctgtgatgagatttacagcaatggtggtgtggttttgccccataaggagtttaagtcgaatattctgaagccagagattgt |
100 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| | ||||||||||||||||||||||| |
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| T |
34586145 |
ttggagaagatgttcatgtttgtgatgagatttacagcaatggtggtgtggttttaccccacaaggagattaagacaaatattctgaagccagagattgt |
34586244 |
T |
|
| Q |
101 |
catgtatggtcaatgttgcttggcatgtggt---gaggaggtagtaatttattgagt |
154 |
Q |
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||||| |||| |||||||| ||||||||| ||||||||||||| ||||||||| |
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| T |
34586245 |
catgtgaggtctatgttgctcagcatgtggtaaggaggaggtagtaacttattgagt |
34586301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 203 - 382
Target Start/End: Original strand, 34586352 - 34586537
Alignment:
| Q |
203 |
cctttctccctgcagtgttcaagtcagtttttggattagattgagtgatgacactacaatgttgaaaggtcataatctttgt-------ataaatttggt |
295 |
Q |
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||||||||||| |||||| |||||||||||| |||||||||||||||||| || |||||| |||||||||||||||| |||| || |||||| |
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| T |
34586352 |
cctttctccctacagtgtacaagtcagtttt-ggattagattgagtgatgccattacaatattgaaaggtcataatccttgtaaagggcatcggtttggt |
34586450 |
T |
|
| Q |
296 |
cttctgtgcaaaagttgtgtaattttaatttttgtacagaaatacattatcaattagttggttctattaaatctttacaattcatta |
382 |
Q |
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||| |||||||||||||||||||||||| || |||| ||||||| ||||||||||||||| ||| || || ||||| ||| |||||| |
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| T |
34586451 |
cttttgtgcaaaagttgtgtaattttaagttatgtatagaaataaattatcaattagttgtttccatcaagtctttgcaactcatta |
34586537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 469 - 566
Target Start/End: Original strand, 45340645 - 45340744
Alignment:
| Q |
469 |
atgttgctattgatcacaagactggattgagtaggggttttggctttgtca--tttgttagcagagaagatgctcagagggctattaacaaactcaatgg |
566 |
Q |
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|||||||||||||||| |||||||| |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
45340645 |
atgttgctattgatcaaaagactggcatgagtaggggctttggctttgtcaactttgttagcagggaagatgctcagagggctatcaacaaactcaatgg |
45340744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 566
Target Start/End: Original strand, 11853032 - 11853103
Alignment:
| Q |
497 |
gagtaggggttttggctttgtca--tttgttagcagagaagatgctcagagggctattaacaaactcaatgg |
566 |
Q |
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||||||||| ||||||||||||| ||||| | ||| |||||||||||||| |||||||||||||| ||||| |
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| T |
11853032 |
gagtagggggtttggctttgtcaactttgtcaacagggaagatgctcagagagctattaacaaactgaatgg |
11853103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30921735 - 30921801
Alignment:
| Q |
1 |
ttggagaagatgtacatgtctgtgatgagatttacagcaatggtggtgtggttttgccccataagga |
67 |
Q |
| |
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||||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
30921735 |
ttggagaagatgtccatgtatctgatgaagtttacagcaatggtggtgtggttttgccccacaagga |
30921801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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