View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18689_high_10 (Length: 393)
Name: NF18689_high_10
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_high_10 |
 |  |
|
Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 32703269 - 32703641
Alignment:
| Q |
8 |
ccaagaatatatattatatgttggataagtgctcaacaattgtttttt-agtagttttgtcnnnnnnnnnt----tgttttttaattgtatttttaaaaa |
102 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
32703269 |
ccaaaaatatatattataagttagataagtgctcaacaattttttttttagtagttttgtcaaaaaaaaataatttgttttttaattgtatttttaaaaa |
32703368 |
T |
 |
| Q |
103 |
acaagaaatatttatgtcagtcactatgaaataatcgacaatcaatgtaagacnnnnnnnnn--aacaaacaaaaatgaaatatattaacaccaaacaat |
200 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |
|
|
| T |
32703369 |
acaagaaatatttaggtc-gtcactatgaaataatcgacaatcaatgtaagacttttttttttgaacaaacaaaaatggaatatattaacaccaaaacgt |
32703467 |
T |
 |
| Q |
201 |
aattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatacaagacagttagtcgatatccatacatatgagcgggt |
300 |
Q |
| |
|
||||||| || || ||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
32703468 |
aattgttgcaccacaagatgtgccataacaatcacggagaaaaacacatattagtcaatgatacaagacagttagtcgatatctatacatatgagcggat |
32703567 |
T |
 |
| Q |
301 |
tcgatcaccaattataaataacgttataatgtgaatattatgccattgtctagaattaaagtgttgtatatagc |
374 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32703568 |
tcgaccaccaattataaataacgttataatatgaatattatgtcattgtctagaattaaagtgttgtatatagc |
32703641 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 48394458 - 48394530
Alignment:
| Q |
243 |
aacacatgctagtcaatgatacaagacagttagtcgatatccatacatatgagcgggttcgatcaccaattat |
315 |
Q |
| |
|
||||||| |||||||| ||||| ||| ||||| |||| ||||||||| ||||||||||| |||||||||| |
|
|
| T |
48394458 |
aacacattctagtcaaaattacaaaacaattagtggatacccatacataatagcgggttcgaccaccaattat |
48394530 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 46145151 - 46145306
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac |
264 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| |||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46145151 |
aacaaacaaaaatggaatatattaacatcaaatcgtaattgttgcagcacaagatgtgccataacaatcacggagagaaacacaaactagtcaatgatac |
46145250 |
T |
 |
| Q |
265 |
aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata |
320 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
46145251 |
aagacagttagtcgatacccatacaaatgagcgggttcgaccaccaattatgaata |
46145306 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 165 - 315
Target Start/End: Complemental strand, 19740705 - 19740554
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgata |
263 |
Q |
| |
|
||||||||||| || |||||||||||||||| | |||||||| ||||| ||| ||| |||||||||||||||| ||||||||| ||||||| || || |
|
|
| T |
19740705 |
aacaaacaaaactggaatatattaacaccaataacgtaattgttgcagcacaaggtgtgccataacaatcacggaaagaaacacagtctagtcagtgtta |
19740606 |
T |
 |
| Q |
264 |
caagacagttagtcgatatccatacatatgagcgggttcgatcaccaattat |
315 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| | |||||||||| |
|
|
| T |
19740605 |
caagacagttcgtcgatactcatacatatgagcgggttcaaccaccaattat |
19740554 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 165 - 310
Target Start/End: Complemental strand, 36223754 - 36223608
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgata |
263 |
Q |
| |
|
||||| |||||||| |||| |||||||||||| | |||||||| ||||| ||| ||| || ||||||| || |||||||||||| |||||||||||| |
|
|
| T |
36223754 |
aacaatcaaaaatggaataaattaacaccaaagacgtaattgttgcagcacaaggtgtgccctaacaattacagagagaaacacagagtagtcaatgata |
36223655 |
T |
 |
| Q |
264 |
caagacagttagtcgatatccatacatatgagcgggttcgatcacca |
310 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
36223654 |
caaggcagttagtcgatacccatacaaatgagcgggttcgaccacca |
36223608 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 33169134 - 33169289
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac |
264 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| | ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33169134 |
aacaaacaaaaatggaatatattaacaccaaatcgtaattgctgcagcacaagatgtgccataacaatcacggagagaaacacaaactagtcaatgatac |
33169233 |
T |
 |
| Q |
265 |
aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata |
320 |
Q |
| |
|
|||| |||||||| ||| ||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
33169234 |
aagatagttagtcaatacccatacaaatgagcgggttcgaccaccaattataaata |
33169289 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 165 - 320
Target Start/End: Complemental strand, 8942072 - 8941917
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
8942072 |
aacaaacaaaaatgaaatatattaacaccaaaacataattgctccagcacaagatgtgccataacaatcacggagagaaatacagactagtcaatgatat |
8941973 |
T |
 |
| Q |
265 |
aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata |
320 |
Q |
| |
|
||||||||| ||||||| | ||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
8941972 |
aagacagttggtcgatacctatatatatgagcgggttcgaccaccaattatgaata |
8941917 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 315
Target Start/End: Original strand, 24407432 - 24407579
Alignment:
| Q |
169 |
aacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatacaag |
267 |
Q |
| |
|
|||||||||| ||||||||||||||| | | |||||| ||||| | ||| ||| |||||||||||||||| ||||||||| |||||||||| ||||| |
|
|
| T |
24407432 |
aacaaaaatggaatatattaacaccagaaacgtaattgctacagtacaaggtgtgccataacaatcacggaaagaaacacagtctagtcaatgttacaaa |
24407531 |
T |
 |
| Q |
268 |
acagttagtcgatatccatacatatgagcgggttcgatcaccaattat |
315 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
24407532 |
acagctagtcgatacccatacatatgagcgggttcgaccaccaattat |
24407579 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 32228377 - 32228430
Alignment:
| Q |
262 |
tacaagacagttagtcgatatccatacatatgagcgggttcgatcaccaattat |
315 |
Q |
| |
|
||||| ||| |||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
32228377 |
tacaatacaattagtcgatacccatacatttgagcgggttcgatcaccaattat |
32228430 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 165 - 320
Target Start/End: Complemental strand, 963827 - 963672
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac |
264 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| | ||||| || |||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
963827 |
aacaaacaaaaatggaatatattaacaccaaattgtaattgctgcagcacaaaatgtgccataacaatcacggagagaaacacaaactagtcaatgatac |
963728 |
T |
 |
| Q |
265 |
aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata |
320 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
963727 |
aagacagttagtcgatacccatacaaatgagcgggttcgaccaccaattatgaata |
963672 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 3140328 - 3140483
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac |
264 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||| |||||| | || || ||||||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
3140328 |
aacaaacaaaaatggaatttattaagaccaaaacgtaattgctgcaacacaagatgtgccataacaatcacggagagaaatacagactagtcaatgatac |
3140427 |
T |
 |
| Q |
265 |
aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata |
320 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
3140428 |
aagacagttagtcgatacccatacatatgagcgggttcgaccaccaattatgaata |
3140483 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 313
Target Start/End: Complemental strand, 50652013 - 50651864
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgata |
263 |
Q |
| |
|
||||| |||||||| |||||||||| |||||| | |||||||| ||||| ||| ||| || ||||||| || ||||||||||| ||||||| |||| |
|
|
| T |
50652013 |
aacaatcaaaaatggaatatattaataccaaagatgtaattgttgcagcacaaggtgtgccttaacaattacatagagaaacacagagtagtcaaagata |
50651914 |
T |
 |
| Q |
264 |
caagacagttagtcgatatccatacatatgagcgggttcgatcaccaatt |
313 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
50651913 |
caaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaatt |
50651864 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 13937176 - 13937331
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac |
264 |
Q |
| |
|
|||||| ||| ||| |||| |||||||||||| |||||| | ||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
13937176 |
aacaaaaaaatatggaataaattaacaccaaatcgtaattgctgcagcataagatgtgccataacaatcacggagagaaatacaaactagtcaatgatac |
13937275 |
T |
 |
| Q |
265 |
aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata |
320 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
13937276 |
aagacagttagtcgatacccatacaaatgagcgggttcgaccaccaattatgaata |
13937331 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 52254994 - 52255145
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac |
264 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| |||||| | ||||| ||||||| ||||||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
52254994 |
aacaaacaaaaatgaaatatagtaacatcaaatcgtaattgctgcagcacaagatgtgtcataacaatcacgaagagaaatacaaactagtcaatgatac |
52255093 |
T |
 |
| Q |
265 |
aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata |
320 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| || |||||||||||||||| |
|
|
| T |
52255094 |
aagacagttagtcgatacccatacaaatgagcgagt----tcaccaattataaata |
52255145 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 313
Target Start/End: Original strand, 2490687 - 2490836
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgata |
263 |
Q |
| |
|
||||| |||||||| ||||||||| |||||| | |||||||| ||||||||| ||| || ||||||| || ||||||||||| ||||||| |||| |
|
|
| T |
2490687 |
aacaatcaaaaatggaatatattatcaccaatgatgtaattgttgcagcataaggtgtgccttaacaattacatagagaaacacagagtagtcaaagata |
2490786 |
T |
 |
| Q |
264 |
caagacagttagtcgatatccatacatatgagcgggttcgatcaccaatt |
313 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
2490787 |
caaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaatt |
2490836 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 315
Target Start/End: Original strand, 6477994 - 6478145
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgata |
263 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| | |||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||| | || |
|
|
| T |
6477994 |
aacaaataaaaatggaatataataacaccaataacgtaattgttacagcataaggtgtaccataacaatcacagaaagaaacacagtctagtcagagtta |
6478093 |
T |
 |
| Q |
264 |
caagacagttagtcgatatccatacatatgagcgggttcgatcaccaattat |
315 |
Q |
| |
|
||| ||| |||||||||| ||||||| ||| ||| ||||| |||||||||| |
|
|
| T |
6478094 |
caatacaattagtcgatacccatacaattgaacggattcgaccaccaattat |
6478145 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 10308178 - 10308084
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaat |
259 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| | ||||| ||||||| ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
10308178 |
aacaaacaaaaatggaatatattaacaccaaatcgtaattgctgcagcacaagatgtgccataacaatcaccgagagaaacacaaactagtcaat |
10308084 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 315
Target Start/End: Complemental strand, 12258109 - 12257965
Alignment:
| Q |
172 |
aaaaatgaaatatattaacacc-aaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatacaagaca |
270 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||| ||||||||| ||| || |||||||||| | ||||||||| ||||||| | ||||| | | |
|
|
| T |
12258109 |
aaaaatgaaatatattaacatcgaaagcgtaattgttgcagcataagttgtgcctaaacaatcacgaaaagaaacacagtctagtcagtattacaaaata |
12258010 |
T |
 |
| Q |
271 |
gttagtcgatatccatacatatgagcgggttcgatcaccaattat |
315 |
Q |
| |
|
|| |||||||| |||||||| |||||||||||| ||||| |||| |
|
|
| T |
12258009 |
gtcagtcgatactcatacataagagcgggttcgaccaccagttat |
12257965 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 315
Target Start/End: Complemental strand, 12265501 - 12265357
Alignment:
| Q |
172 |
aaaaatgaaatatattaacacc-aaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatacaagaca |
270 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||| ||||||||| ||| || |||||||||| | ||||||||| ||||||| | ||||| | | |
|
|
| T |
12265501 |
aaaaatgaaatatattaacatcgaaagcgtaattgttgcagcataagttgtgcctaaacaatcacgaaaagaaacacagtctagtcagtattacaaaata |
12265402 |
T |
 |
| Q |
271 |
gttagtcgatatccatacatatgagcgggttcgatcaccaattat |
315 |
Q |
| |
|
|| |||||||| |||||||| |||||||||||| ||||| |||| |
|
|
| T |
12265401 |
gtcagtcgatactcatacataagagcgggttcgaccaccagttat |
12265357 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 196
Target Start/End: Original strand, 30355815 - 30355846
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
30355815 |
aacaaacaaaaatgaaatatattaacaccaaa |
30355846 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 42562933 - 42563013
Alignment:
| Q |
165 |
aacaaacaaaaatgaaatatattaacaccaaacaa--taattgttacagcataagatgtaccataacaatcacggagagaaa |
244 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
42562933 |
aacaaacaaaaatgaaatatattaacacc-gacaacgtaattgatgcagcataaggtgtgttataacaatcacggaaagaaa |
42563013 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 15391728 - 15391769
Alignment:
| Q |
274 |
agtcgatatccatacatatgagcgggttcgatcaccaattat |
315 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
15391728 |
agtcgatacccatacataagagcgggttcgaccaccaattat |
15391769 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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