View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_high_11 (Length: 392)
Name: NF18689_high_11
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 48669153 - 48668772
Alignment:
| Q |
1 |
acatggaagagtggtcatacctgacaggggttctcaatcttttataagtacaattggtcacttagacgccaggcttgatcttcaaaccacaaatggaaat |
100 |
Q |
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| T |
48669153 |
acatggaagagtggtcatacccgacaggggttctcaatcttttgtaagtacaattggtcacttagacgccaggcttgatcttcaaaccacaaatggaaat |
48669054 |
T |
|
| Q |
101 |
ggagccttccaaccacacatgggaaaccgtgctttaatggatctctgcattatgtcttccaagatagcatatgagaaccctaaactcatcaaaaatgtcg |
200 |
Q |
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| T |
48669053 |
ggagccttccaaccacacatgggaaaccgtgctttaatggatctctgcattatgtcttccaagatagcatatgagaaccctaaactcatcaaaaatgtcg |
48668954 |
T |
|
| Q |
201 |
tcaaccaccattggaacatgcactttgtagatttctatcattgttggaatggtatgttgcattatctacaatcataattaatgatttcattcaattcaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48668953 |
tcaaccaccattggaacatgcactttgtagatttctatcattgttggaatggtatgttgcattatctacaatcataattaattatttcattcaattcaac |
48668854 |
T |
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| Q |
301 |
ttttctcacttcctaatccttccttcatcaatcaattcttagatttcgagaaacagatgtccactcaagtcttcatcctatg |
382 |
Q |
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| T |
48668853 |
ttttctcacttcctattccttccttcatcaatcaattcttagatttcgagaaacagatgtccactcaagtcttcatcctatg |
48668772 |
T |
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