View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18689_high_18 (Length: 320)

Name: NF18689_high_18
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18689_high_18
NF18689_high_18
[»] chr4 (1 HSPs)
chr4 (13-301)||(44725201-44725489)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 44725201 - 44725489
Alignment:
Q  13 aatattggcattactcgaaaataaccctagtttgagccaattaatcggatttgtgttggataagaactcggcattagagaagccaaaagcttgccaaaga 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44725201 aatattggcattacttgaaaataaccctagtttgagccaattaatcggatttgtgttggataagaactcggcattagagaagccaaaagcttgccaaaga 44725300  T
Q  113 gaacgagaggctaatggatctctaatgcactgaaggaaagattcttcttccgaattgaactgatggcaatgctattgggagccatgttacaatgatgaag 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44725301 gaacgagaggctaatggatctctaatgcactgaaggaaatattcttcttccgaattgaactgatggcaatgctattgggagccatgttacaatgatgaag 44725400  T
Q  213 caaaggaatcattgttacaaagttgttacaagtcaaccatacaagaaactagatcttttcaggcaaatggagtcgtcatatccaagact 301  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44725401 caaagggatcattgttacaaagttgttacaagtcaaccatacaagaaactagatcttttcaggcaaatgaagtcgtcatatccaagact 44725489  T

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