View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_high_24 (Length: 250)
Name: NF18689_high_24
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15007611 - 15007864
Alignment:
| Q |
1 |
atatagcagctggtattataaca-----gatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataat |
95 |
Q |
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| T |
15007611 |
atatagcagctggtattataacattgaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataat |
15007710 |
T |
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| Q |
96 |
tgtcttttagttatgcctcataattcaaatcatgtga---agttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttctttttat |
192 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||| |
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| T |
15007711 |
tgtcttttagttaggcctcataattcaaatcatgtgaattagttcaaataaattttcgcatgaacttaaggtaatattgattcacattacttctttttac |
15007810 |
T |
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| Q |
193 |
gatgttttgttgagattgct------ttgatatttgattttagtggttgatatt |
240 |
Q |
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| T |
15007811 |
gatgttttgttgagattgttcattaaatgatatttgattttagtggttgatatt |
15007864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 40787235 - 40787473
Alignment:
| Q |
1 |
atatagcagctggtattataacaga---tattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttctataattg |
97 |
Q |
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| T |
40787235 |
atatagcagctggtattataacagaagatattatataaaattgaatccaacctatatcatataatacttatggctctcatcatacaattttca------- |
40787327 |
T |
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| Q |
98 |
tcttttagttatgcctcataattcaaatcatgtgaagttcaaataaattttcgcatcaacttgaggtaatattgattctcgttacttctttttatgatgt |
197 |
Q |
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| T |
40787328 |
---tttagttatgcctcataattcaaatcatgtgaagtttaaataaattttcgcatgatcttgaggtaatattgattctcattacttctttttatgatat |
40787424 |
T |
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| Q |
198 |
tttgttgagattgct------ttgatatttgattttagtggttgatatt |
240 |
Q |
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| T |
40787425 |
ttagttgagattgctcatcaaatgatatttgattttagtggttgatatt |
40787473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 21143251 - 21143307
Alignment:
| Q |
156 |
acttgaggtaatattgattctcgttacttctttttatgatgttttgttgagattgct |
212 |
Q |
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| T |
21143251 |
acttgtggtaatattgattctcgttacttctttttatgatgttttgttgagattgct |
21143307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 191
Target Start/End: Complemental strand, 52311151 - 52311116
Alignment:
| Q |
156 |
acttgaggtaatattgattctcgttacttcttttta |
191 |
Q |
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| T |
52311151 |
acttgaggtaatattgattctcgttacttcttttta |
52311116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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