View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_high_27 (Length: 242)
Name: NF18689_high_27
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_high_27 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 72 - 242
Target Start/End: Original strand, 2261014 - 2261184
Alignment:
| Q |
72 |
attattgtagaacataatgttttggactgattcattggcaactctttgataatccctcaatcacatggtttcataatacttaggagagaaatgtggttta |
171 |
Q |
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| T |
2261014 |
attattgtagaacataatgttttggactaattcattggcaactctttgataatccctcaatcacatggtttcataatacttaggagagaaatgtggttta |
2261113 |
T |
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| Q |
172 |
accaaaatctcaagtggtgtagctttttcattggtcattccaagattttcagtcatatcaacaggttcact |
242 |
Q |
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| T |
2261114 |
accaaaatctcaagtggtgtagctttttcattggtcattccaagattttcagtcatatcaacaggttcact |
2261184 |
T |
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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2261185 - 2261254
Alignment:
| Q |
1 |
agatccatttacaatttcaaaggagtgtaaaaaattagccaaagttaaatgaatcatatgaagaccaaaa |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2261185 |
agatccatttacaatttcaaaggagtgtaaaaaattagccaaagttaaatgaatcatatgaagaccaaaa |
2261254 |
T |
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