View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_high_3 (Length: 598)
Name: NF18689_high_3
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 19 - 586
Target Start/End: Complemental strand, 44532547 - 44531979
Alignment:
| Q |
19 |
atcactcatatcttaacttcccattcaccactatacctattacgtctctctaattagtaagagaatttaccctttatcttccttctccaccacattataa |
118 |
Q |
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| T |
44532547 |
atcactcatatcttaacttcccattcaccactatacctattacgtctctctaattagtaagagaatttaccctttatcttccttctccaccacatcataa |
44532448 |
T |
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| Q |
119 |
tggaaaaaacgttacaattaagaaacccatttctcatgtgattaaatcgattcttcagttaagacctaaataccattatttctctagcnnnnnnn-gtta |
217 |
Q |
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| T |
44532447 |
tggaaaaaacgttacaattaagaaacccatttctcatgtgattaaattgattcttcagttaagacctaaataccattatttgtctagcaaaaaaaagtta |
44532348 |
T |
|
| Q |
218 |
tatatattcccacaattccaatcacccttcaccttcactcaacataattcatttacttcattatttatacaagtcctttttgtataacttaatgttcatg |
317 |
Q |
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| T |
44532347 |
tatatattcccacaattccaatcacccttcaccttcactcaacataattcatttacttcattatttatacaagtcctttttgtataacttaatgttcatg |
44532248 |
T |
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| Q |
318 |
gctacacaaaattgttcaaaatgtgtcatgttggtaacactactagtaacaattctctttgttcatccaacatcctcaacatcaagagggtctctcaacc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44532247 |
gctacacaaaattgttcaaaatgtgtcatgttggtaacactactagtaacaattctctttgttcatccaacattctcaacatcaagagggtctctcaacc |
44532148 |
T |
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| Q |
418 |
atcaccaaatctctcaaggcgggttccgaatcactcttcgccacgttgattccggcaaaaacttgactaaactcgagcgcgttcaacatggcattaaccg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44532147 |
atcaccaaatctctcaaggcgggttccgaatcactcttcgccacgttgattccggcaaaaacttgactaaactcgagcgcgttcaacatggcattaaccg |
44532048 |
T |
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| Q |
518 |
gggacatagccgacttcaaagactaaatgcaatggtgttagcatcatccacaactgaagattcatctca |
586 |
Q |
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| T |
44532047 |
gggacatagccgacttcaaagactaaatgcaatggtgttagcatcatccacaactgaagattcatctca |
44531979 |
T |
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