View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18689_high_30 (Length: 211)

Name: NF18689_high_30
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18689_high_30
NF18689_high_30
[»] chr7 (4 HSPs)
chr7 (11-194)||(23678318-23678501)
chr7 (10-194)||(4287511-4287700)
chr7 (21-112)||(31308771-31308862)
chr7 (96-194)||(31308630-31308731)
[»] chr4 (3 HSPs)
chr4 (11-194)||(12212830-12213017)
chr4 (17-194)||(32465028-32465211)
chr4 (16-194)||(43420055-43420237)
[»] chr8 (4 HSPs)
chr8 (11-194)||(33851863-33852051)
chr8 (138-193)||(23565408-23565463)
chr8 (89-174)||(44629468-44629556)
chr8 (160-194)||(44629413-44629447)
[»] chr5 (3 HSPs)
chr5 (11-194)||(11277033-11277221)
chr5 (11-194)||(30971670-30971857)
chr5 (50-194)||(26243606-26243755)
[»] chr3 (3 HSPs)
chr3 (10-194)||(54800692-54800881)
chr3 (105-194)||(37333079-37333173)
chr3 (52-108)||(37333510-37333566)
[»] chr6 (1 HSPs)
chr6 (11-190)||(23597638-23597822)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 23678318 - 23678501
Alignment:
Q  11 ccaagaatatgtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaat 110  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23678318 ccaacaatatgtgaaatgagtttataattttgctgacaaactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcctaat 23678417  T
Q  111 ctagaggtgtatttatctattattcatttctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  23678418 ctaaaggtgtatttatctattattcatttctttcatatctcctgtgatttcaaaatagtggatgatgccacatgttaatgaatt 23678501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 4287511 - 4287700
Alignment:
Q  10 tccaagaatatgtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaa 109  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  4287511 tccaacaatatgtgaaatgagtttttaattttgctgacaaactaatgcatctccaattccaatccaaagctaaagcaagatttacgagactattgtttaa 4287610  T
Q  110 tct-agaggtgtatttatctattattcat----ttctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    ||| |||||||||||||| || |||||||    ||||||||||||| ||| ||||||||||||||||||  | || ||||||||||||||    
T  4287611 tctaagaggtgtatttatttactattcatttaattctttcatatcctctgcgatttcaaaatagtggattcttccgcatggtaatgaatt 4287700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 31308862 - 31308771
Alignment:
Q  21 gtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaatct 112  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||| || | |||||||||||||    
T  31308862 gtgaaatgagtttctaattttgctgacaaactaatgcatcttcaatttcaatccaaagctaaagcaatatttaggagattattgcttaatct 31308771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 31308731 - 31308630
Alignment:
Q  96 atactattgcttaatcta-gaggtgtatttatctattattcatttctttcat--atcccctgtgatttcaaaatagtggatgatgccacatggtaatgaa 192  Q
    |||||||||||||||||| ||| ||||||||| || ||||||||| |||  |  ||||  ||||||||||||||||||||||||||||||||||||||||    
T  31308731 atactattgcttaatctaagagatgtatttatttactattcattttttttttttatcctatgtgatttcaaaatagtggatgatgccacatggtaatgaa 31308632  T
Q  193 tt 194  Q
    ||    
T  31308631 tt 31308630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 12212830 - 12213017
Alignment:
Q  11 ccaagaatatgtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaat 110  Q
    |||| |||||||||||||||||| |||||||||||| | ||||||||||||  |||||||||||||||||||||||||||||| || |||||||||||||    
T  12212830 ccaataatatgtgaaatgagtttctaattttgctgagaaactaatgcatctcaaattccaatccaaagttaaagcaagatttaggagactattgcttaat 12212929  T
Q  111 ctagaggtgtatttatctattattcat----ttctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    |||||||| ||||||| || |||||||    ||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||    
T  12212930 ctagaggtatatttatttactattcatttaattctttcatatcctctatgatttcaaaatagtggttgatgtcacatggtaatgaatt 12213017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 32465028 - 32465211
Alignment:
Q  17 atatgtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaatct-aga 115  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||  ||||||||||||||| |||||||||||||| || |||| |||||||||| |||    
T  32465028 atatgtgaaatgagtttctaattttactgacaaactaatgcatctctaattccaatccaaaggtaaagcaagatttaggagactactgcttaatctaaga 32465127  T
Q  116 ggtgta-tttatctattattc----atttctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    |||||| ||||| || |||||    | ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  32465128 ggtgtattttatttactattcgtttaattctttcatatcctctgttatttcaaaatagtagatgatgccacatggtaatgaatt 32465211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 43420237 - 43420055
Alignment:
Q  16 aatatgtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaatct-ag 114  Q
    ||||||| |||||||||| ||| |||||||||| |||||||||||| ||||| |||||||||  ||||||||||||||| | |||||||||| |||| ||    
T  43420237 aatatgtaaaatgagtttttaactttgctgacacactaatgcatctccaattgcaatccaaaactaaagcaagatttacaagactattgctttatctaag 43420138  T
Q  115 aggtgtatttatctattattcat----ttctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    |||||||||||| || |||||||    ||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||    
T  43420137 aggtgtatttatttactattcatttaattctttcatat-ctctgtgatttcaaaatagtggatgatgccacatggtaacgaatt 43420055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 33852051 - 33851863
Alignment:
Q  11 ccaagaatatgtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaat 110  Q
    |||| |||||||||||||||||| |||||||||| ||| | |||||||||| |||||||||||||||||||||||||||||||  | |||||||||||||    
T  33852051 ccaacaatatgtgaaatgagtttctaattttgctaacaaattaatgcatctccaattccaatccaaagttaaagcaagatttagcagactattgcttaat 33851952  T
Q  111 ct-agaggtgtatttatctattattcat----ttctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    || |||||||||||||| || |||||||    |||||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  33851951 ctaagaggtgtatttatttactattcatttaattctttcatatcctttgtgatttcaaaatagtggatgatgcaacatggtaatgaatt 33851863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 23565463 - 23565408
Alignment:
Q  138 ttctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaat 193  Q
    ||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||    
T  23565463 ttctttcatatcctctctgatttcaaaatagtggttgaagccacatggtaatgaat 23565408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 44629556 - 44629468
Alignment:
Q  89 atttacgatactattgcttaatcta-gaggtgtatttat---ctattattcatttctttcatatcccctgtgatttcaaaatagtggatg 174  Q
    ||||| || |||||||||||||||| |||||||||||||   |||| ||| | ||||||||||||   ||||||||||||||||||||||    
T  44629556 atttaggagactattgcttaatctaagaggtgtatttatttactatcatttaattctttcatatctt-tgtgatttcaaaatagtggatg 44629468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 44629447 - 44629413
Alignment:
Q  160 tcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    |||||||||||||||||||||||||||||| ||||    
T  44629447 tcaaaatagtggatgatgccacatggtaattaatt 44629413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 11277221 - 11277033
Alignment:
Q  11 ccaagaatatgtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaat 110  Q
    |||| ||||||||||||||| || |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| || ||||||| |||||    
T  11277221 ccaacaatatgtgaaatgagcttctaattttgctgacaaactaatgcatctccaattccaatccaaagctaaagcaagatttatgagactattgtttaat 11277122  T
Q  111 ct-agaggtgtatttatctattattcat----ttctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    || |||||||||||||| || |||||||    ||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  11277121 ctaagaggtgtatttatttactattcatttaattctttcatatcctctgtgatttcaaaatagtggatgatgccacgtagtaatgaatt 11277033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 30971857 - 30971670
Alignment:
Q  11 ccaagaatatgtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaat 110  Q
    |||| |||||||||||||| ||| |||||||||||||| |||||||||||| |||||  ||||||||| |||||||||||||| || |||||||||||||    
T  30971857 ccaacaatatgtgaaatgaatttctaattttgctgacaaactaatgcatctccaattttaatccaaagctaaagcaagatttatgagactattgcttaat 30971758  T
Q  111 cta-gaggtgtatttatctattattcatttc----tttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    ||| ||||||||||||| || ||||||||||    |||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  30971757 ctaagaggtgtatttatttactattcatttcattctttcatatcta-tgtgatttcaaaatagtggatgatgccacatggtaatgaatt 30971670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 50 - 194
Target Start/End: Complemental strand, 26243755 - 26243606
Alignment:
Q  50 actaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaatcta-gaggtgtatttatctattattcatttc----tttc 144  Q
    |||||||||||| |||||||||||||||| || ||||||||||| || | | |||||||||||| |||| |||||||| || | |||||||     ||||    
T  26243755 actaatgcatctccaattccaatccaaagatatagcaagatttaggagattgttgcttaatctaagaggcgtatttatttactgttcatttaattatttc 26243656  T
Q  145 atatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
      ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  26243655 gcatcctttgtgatttcaaaatagtggatgatgccacatggtaatgaatt 26243606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 54800692 - 54800881
Alignment:
Q  10 tccaagaatatgtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaa 109  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || | ||||| ||||    
T  54800692 tccaacaatatgtgaaatgagtttctaattttgctgacaaactaatgcatcttcaattccaattcaaagctaaagcaaaatttaggagattattgtttaa 54800791  T
Q  110 tct-agaggtgtatttatctattattcat----ttctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    ||| |||||||||||||| || |||||||    ||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||    
T  54800792 tctaagaggtgtatttatttactattcatttaattctttcatatcctctgtgatttcaaaatagaggttgatgtcacatggtaatgaatt 54800881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 37333173 - 37333079
Alignment:
Q  105 cttaatcta-gaggtgtatttatctattattcattt----ctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatgaatt 194  Q
    ||||||||| ||||||||||||| || |||||||||    ||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||||    
T  37333173 cttaatctaagaggtgtatttatttactattcatttaattctttcatatcctctgtgatttcaaaatagtagatgatgacacgtggtaatgaatt 37333079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 37333566 - 37333510
Alignment:
Q  52 taatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgctta 108  Q
    |||||||||| |||||||||||||||| |||||||||||||| || ||| |||||||    
T  37333566 taatgcatctccaattccaatccaaagataaagcaagatttaggagactgttgctta 37333510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 23597638 - 23597822
Alignment:
Q  11 ccaagaatatgtgaaatgagtttataattttgctgacagactaatgcatcttcaattccaatccaaagttaaagcaagatttacgatactattgcttaat 110  Q
    |||| |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |||| ||||| | |||||| || |||||||||||||    
T  23597638 ccaacaatatgtgaaatgagtttctaattttgctgacaaactaatgcatctccaattccaatcgaaagctaaagaatgatttaggagactattgcttaat 23597737  T
Q  111 ct-agaggtgtatttatcta----ttattcatttctttcatatcccctgtgatttcaaaatagtggatgatgccacatggtaatg 190  Q
    || || ||| ||||||| ||    | ||| | ||||||||||||| || ||||| ||||||||| ||||||| ||| ||||||||    
T  23597738 ctaagtggtctatttatttacttttaatttaattctttcatatcctctttgattacaaaatagtagatgatgtcacgtggtaatg 23597822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University