View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18689_high_6 (Length: 463)
Name: NF18689_high_6
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 115 - 442
Target Start/End: Complemental strand, 32588701 - 32588374
Alignment:
| Q |
115 |
atgtttatgcgtgtttgtgagggaattttaaaacggatatagtagcatatgtaagacgacttggttgggacaagatggggtgactaattgttccatttta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32588701 |
atgtttatgcgtgtttgtgagggaattttaaaacggatatagtagcatatgtaagacgacttggttgggacaagatggggtgactaattgttccatttta |
32588602 |
T |
|
| Q |
215 |
ttgaacctacctttcgttatctttgtattgacacttttattattttctgcgatatcatccaaaggaaatcaatttttctgtttgcagaatatgataatgt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32588601 |
ttgaacctacctttcgttatctttgtattgacacttttattattttctgcgatatcatacaaaggaaatcaatttttctgtttgcagaatatgataatgt |
32588502 |
T |
|
| Q |
315 |
aggttccactagagttaaaggttttaaggtggtccttgcatgggagaggtataattagttgtttgattccacgaaagtgacacaattcacgtaacacctt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32588501 |
aggttccactagagttaaaggttttaaggtggtccttgcatgggagaggtataattagttgtttgattccacgaaagtgacacaattcacgtaacacctt |
32588402 |
T |
|
| Q |
415 |
tattttcttcacaaagttacgggtaatt |
442 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32588401 |
tattttcttcacaaagttacgggtaatt |
32588374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University