View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_high_7 (Length: 454)
Name: NF18689_high_7
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 36908099 - 36907676
Alignment:
| Q |
13 |
aatataagttattttggtaaaacaatatcttattttatatattgttttacaacatcactgaattcctcccctnnnnnnnncatcattgaattcttaattt |
112 |
Q |
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| T |
36908099 |
aatataagttattttggtaaaacaatatcttattttatatattgttttacaacatcactgaattcctcccctaaaaaaaacat-attgaattcttaattt |
36908001 |
T |
|
| Q |
113 |
tgttcttttatatcctcgttatttatcattctcatatttatacttttgtaatatctttttcgtataccgtttattaatgaagttaatgaatggtgtgatt |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36908000 |
tgttcttttatatcctcgttatttatcactctcatatttatacttttgtaatatctatttcgtataccgtttattaatgaagttaacgaatggtgtgatt |
36907901 |
T |
|
| Q |
213 |
ttagaaagtgaaacatatgttttgaagtcggcgggtaacttggccatcacttctcttctggtagagatgtaataattaatatcttctctcacgggggtgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36907900 |
ttagaaagtgaaacatatgttttgaagtcggcgggtaacttggccatcacttctcttctggtagagatgtaataattaatatcttctctcac-ggggtgg |
36907802 |
T |
|
| Q |
313 |
gaatagtgaagtctcgtaaatctgagaatctgacatactttacatctccaaaatgtgcgctcttatggattatgatcattgggaagtgtaagatcaaaca |
412 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36907801 |
gaatagtgaagtctcgtaaatctgagaatctggcatactttacatctccaaaatgtgcgctcttatggattatgatcatt-ggaagtgtaagatcaaaca |
36907703 |
T |
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| Q |
413 |
tgtttatcgtctaactattgtgcatat |
439 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
36907702 |
tgtttatcgactaactattgtgcatat |
36907676 |
T |
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