View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18689_high_8 (Length: 431)
Name: NF18689_high_8
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 71 - 400
Target Start/End: Original strand, 44577213 - 44577539
Alignment:
| Q |
71 |
cactaatgtgttatgtacgtggtttgtttttgttgacaatatgtcatgtacgtgtggttgattttttcaaagtggttagaattaattttgtagctaggtg |
170 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44577213 |
cactaatgtgtcatgtacgtggtttgtttttgttgacaatatgtcatgtacgtgtggttgattttttcaaagtggttagaatta---ttgtagctaggta |
44577309 |
T |
|
| Q |
171 |
gcatttctaacctaaggaggattaatagtgtacatttgatttacgttggtatgtgcattagaatcatgcaaagagagtgtgggatgaagatggatttcac |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44577310 |
gcatttctaacctaaggaggattaatagtggacatttgatttacgttggtatgtgcattagaatcatgcaaagagagtgtgggatgaagatggatttcac |
44577409 |
T |
|
| Q |
271 |
gtgctttcaaatttgttggcataaagagagtgaatcgacattacatgagtaatggaagctttgacattttgtattttgtttaacttttatccctaatgtt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44577410 |
gtgctttcaaatttgttggcataaagagagtgaatcgacattacatgagtaatggaagctttgacattttgtattttgtttaacttttatccctaatgtt |
44577509 |
T |
|
| Q |
371 |
acgatctaatatatcactctttctttaggg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44577510 |
acgatctaatatatcactctttctttaggg |
44577539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University