View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_low_10 (Length: 405)
Name: NF18689_low_10
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 39 - 405
Target Start/End: Complemental strand, 33117137 - 33116771
Alignment:
| Q |
39 |
cataaactaactcaaactgactcaacccttctgagaggtgattctcttattccaaaacttgaattgcagagtcctttgttgaagcatcttctccacttcc |
138 |
Q |
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| T |
33117137 |
cataaactaactcaaactgactcaacccttctgagaggcgattctcttattccaaaacttgaattgcagagtcctttgttgaagcatcttctccacttcc |
33117038 |
T |
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| Q |
139 |
tcaattggaacacctttggtttcaggtacgaaaacgaggacaaagaaaattgctatgacagcaacaattccaaacaacatgaatgtccatgcaactccaa |
238 |
Q |
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| T |
33117037 |
tcaattggaacacctttggtttctggtacgaaaacgaggacaaaggaacttgctatgacagcaacaattccaaacaacatgaatgtccatgcaactccaa |
33116938 |
T |
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| Q |
239 |
tagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagg |
338 |
Q |
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| T |
33116937 |
tagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagg |
33116838 |
T |
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| Q |
339 |
gtaaatctcagagtttatgacccacggaacagtccccattccaggtgaaaagaacagtatatagaga |
405 |
Q |
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| T |
33116837 |
gtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagaga |
33116771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 392
Target Start/End: Complemental strand, 33120136 - 33119996
Alignment:
| Q |
252 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagag |
351 |
Q |
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| T |
33120136 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagag |
33120037 |
T |
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| Q |
352 |
tttatgacccacggaacagtccccattccaggtgaaaagaa |
392 |
Q |
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| T |
33120036 |
ttgataacccatggaaccgttcccattcctggtgaaaagaa |
33119996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 392
Target Start/End: Original strand, 21491884 - 21492014
Alignment:
| Q |
262 |
gattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgaccc |
361 |
Q |
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||||||||||||| |||||| || | ||| || ||||||| || ||||||||||| | |||||||||||| || || || || |||||||| | |||| |
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| T |
21491884 |
gattgagaaacaacaaggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaaccc |
21491983 |
T |
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| Q |
362 |
acggaacagtccccattccaggtgaaaagaa |
392 |
Q |
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| T |
21491984 |
atggaactgttcccattccaggcgagaagaa |
21492014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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