View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18689_low_11 (Length: 393)

Name: NF18689_low_11
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18689_low_11
NF18689_low_11
[»] chr7 (2 HSPs)
chr7 (8-374)||(32703269-32703641)
chr7 (243-315)||(48394458-48394530)
[»] chr4 (3 HSPs)
chr4 (165-320)||(46145151-46145306)
chr4 (165-315)||(19740554-19740705)
chr4 (165-310)||(36223608-36223754)
[»] chr5 (4 HSPs)
chr5 (165-320)||(33169134-33169289)
chr5 (165-320)||(8941917-8942072)
chr5 (169-315)||(24407432-24407579)
chr5 (262-315)||(32228377-32228430)
[»] chr3 (3 HSPs)
chr3 (165-320)||(963672-963827)
chr3 (165-320)||(3140328-3140483)
chr3 (165-313)||(50651864-50652013)
[»] chr6 (1 HSPs)
chr6 (165-320)||(13937176-13937331)
[»] chr1 (3 HSPs)
chr1 (165-320)||(52254994-52255145)
chr1 (165-313)||(2490687-2490836)
chr1 (165-315)||(6477994-6478145)
[»] chr8 (4 HSPs)
chr8 (165-259)||(10308084-10308178)
chr8 (172-315)||(12257965-12258109)
chr8 (172-315)||(12265357-12265501)
chr8 (165-196)||(30355815-30355846)
[»] chr2 (2 HSPs)
chr2 (165-244)||(42562933-42563013)
chr2 (274-315)||(15391728-15391769)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 32703269 - 32703641
Alignment:
8 ccaagaatatatattatatgttggataagtgctcaacaattgtttttt-agtagttttgtcnnnnnnnnnt----tgttttttaattgtatttttaaaaa 102  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||||| ||||||||||||         |    |||||||||||||||||||||||||    
32703269 ccaaaaatatatattataagttagataagtgctcaacaattttttttttagtagttttgtcaaaaaaaaataatttgttttttaattgtatttttaaaaa 32703368  T
103 acaagaaatatttatgtcagtcactatgaaataatcgacaatcaatgtaagacnnnnnnnnn--aacaaacaaaaatgaaatatattaacaccaaacaat 200  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||           |||||||||||||| |||||||||||||||||   |    
32703369 acaagaaatatttaggtc-gtcactatgaaataatcgacaatcaatgtaagacttttttttttgaacaaacaaaaatggaatatattaacaccaaaacgt 32703467  T
201 aattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatacaagacagttagtcgatatccatacatatgagcgggt 300  Q
    ||||||| || || ||||||| |||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||||||||||| |    
32703468 aattgttgcaccacaagatgtgccataacaatcacggagaaaaacacatattagtcaatgatacaagacagttagtcgatatctatacatatgagcggat 32703567  T
301 tcgatcaccaattataaataacgttataatgtgaatattatgccattgtctagaattaaagtgttgtatatagc 374  Q
    |||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
32703568 tcgaccaccaattataaataacgttataatatgaatattatgtcattgtctagaattaaagtgttgtatatagc 32703641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 48394458 - 48394530
Alignment:
243 aacacatgctagtcaatgatacaagacagttagtcgatatccatacatatgagcgggttcgatcaccaattat 315  Q
    ||||||| ||||||||   ||||| ||| ||||| |||| |||||||||  ||||||||||| ||||||||||    
48394458 aacacattctagtcaaaattacaaaacaattagtggatacccatacataatagcgggttcgaccaccaattat 48394530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 46145151 - 46145306
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac 264  Q
    |||||||||||||| |||||||||||| ||||   |||||||| ||||| ||||||| ||||||||||||||||||||||||||  ||||||||||||||    
46145151 aacaaacaaaaatggaatatattaacatcaaatcgtaattgttgcagcacaagatgtgccataacaatcacggagagaaacacaaactagtcaatgatac 46145250  T
265 aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata 320  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||    
46145251 aagacagttagtcgatacccatacaaatgagcgggttcgaccaccaattatgaata 46145306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 165 - 315
Target Start/End: Complemental strand, 19740705 - 19740554
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgata 263  Q
    ||||||||||| || ||||||||||||||||  |  |||||||| ||||| ||| ||| |||||||||||||||| |||||||||  ||||||| || ||    
19740705 aacaaacaaaactggaatatattaacaccaataacgtaattgttgcagcacaaggtgtgccataacaatcacggaaagaaacacagtctagtcagtgtta 19740606  T
264 caagacagttagtcgatatccatacatatgagcgggttcgatcaccaattat 315  Q
    |||||||||| |||||||  ||||||||||||||||||| | ||||||||||    
19740605 caagacagttcgtcgatactcatacatatgagcgggttcaaccaccaattat 19740554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 165 - 310
Target Start/End: Complemental strand, 36223754 - 36223608
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgata 263  Q
    ||||| |||||||| |||| |||||||||||| |  |||||||| ||||| ||| ||| || ||||||| || ||||||||||||   ||||||||||||    
36223754 aacaatcaaaaatggaataaattaacaccaaagacgtaattgttgcagcacaaggtgtgccctaacaattacagagagaaacacagagtagtcaatgata 36223655  T
264 caagacagttagtcgatatccatacatatgagcgggttcgatcacca 310  Q
    |||| ||||||||||||| ||||||| |||||||||||||| |||||    
36223654 caaggcagttagtcgatacccatacaaatgagcgggttcgaccacca 36223608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 33169134 - 33169289
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac 264  Q
    |||||||||||||| |||||||||||||||||   |||||| | ||||| ||||||| ||||||||||||||||||||||||||  ||||||||||||||    
33169134 aacaaacaaaaatggaatatattaacaccaaatcgtaattgctgcagcacaagatgtgccataacaatcacggagagaaacacaaactagtcaatgatac 33169233  T
265 aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata 320  Q
    |||| |||||||| ||| ||||||| |||||||||||||| |||||||||||||||    
33169234 aagatagttagtcaatacccatacaaatgagcgggttcgaccaccaattataaata 33169289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 165 - 320
Target Start/End: Complemental strand, 8942072 - 8941917
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac 264  Q
    ||||||||||||||||||||||||||||||||  ||||||| | ||||| ||||||| |||||||||||||||||||||| |||  |||||||||||||     
8942072 aacaaacaaaaatgaaatatattaacaccaaaacataattgctccagcacaagatgtgccataacaatcacggagagaaatacagactagtcaatgatat 8941973  T
265 aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata 320  Q
    ||||||||| ||||||| | ||| |||||||||||||||| |||||||||| ||||    
8941972 aagacagttggtcgatacctatatatatgagcgggttcgaccaccaattatgaata 8941917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 315
Target Start/End: Original strand, 24407432 - 24407579
Alignment:
169 aacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatacaag 267  Q
    |||||||||| ||||||||||||||| | |  |||||| ||||| | ||| ||| |||||||||||||||| |||||||||  |||||||||| |||||     
24407432 aacaaaaatggaatatattaacaccagaaacgtaattgctacagtacaaggtgtgccataacaatcacggaaagaaacacagtctagtcaatgttacaaa 24407531  T
268 acagttagtcgatatccatacatatgagcgggttcgatcaccaattat 315  Q
    |||| ||||||||| |||||||||||||||||||||| ||||||||||    
24407532 acagctagtcgatacccatacatatgagcgggttcgaccaccaattat 24407579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 32228377 - 32228430
Alignment:
262 tacaagacagttagtcgatatccatacatatgagcgggttcgatcaccaattat 315  Q
    ||||| ||| |||||||||| |||||||| ||||||||||||||||||||||||    
32228377 tacaatacaattagtcgatacccatacatttgagcgggttcgatcaccaattat 32228430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 165 - 320
Target Start/End: Complemental strand, 963827 - 963672
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac 264  Q
    |||||||||||||| |||||||||||||||||   |||||| | ||||| || |||| ||||||||||||||||||||||||||  ||||||||||||||    
963827 aacaaacaaaaatggaatatattaacaccaaattgtaattgctgcagcacaaaatgtgccataacaatcacggagagaaacacaaactagtcaatgatac 963728  T
265 aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata 320  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||    
963727 aagacagttagtcgatacccatacaaatgagcgggttcgaccaccaattatgaata 963672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 3140328 - 3140483
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac 264  Q
    |||||||||||||| ||| |||||| ||||||   |||||| | || || ||||||| |||||||||||||||||||||| |||  ||||||||||||||    
3140328 aacaaacaaaaatggaatttattaagaccaaaacgtaattgctgcaacacaagatgtgccataacaatcacggagagaaatacagactagtcaatgatac 3140427  T
265 aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata 320  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||    
3140428 aagacagttagtcgatacccatacatatgagcgggttcgaccaccaattatgaata 3140483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 313
Target Start/End: Complemental strand, 50652013 - 50651864
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgata 263  Q
    ||||| |||||||| |||||||||| |||||| |  |||||||| ||||| ||| ||| || ||||||| ||  |||||||||||   ||||||| ||||    
50652013 aacaatcaaaaatggaatatattaataccaaagatgtaattgttgcagcacaaggtgtgccttaacaattacatagagaaacacagagtagtcaaagata 50651914  T
264 caagacagttagtcgatatccatacatatgagcgggttcgatcaccaatt 313  Q
    |||| ||||||||||||| ||||||| |||||||||||||| ||||||||    
50651913 caaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaatt 50651864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 13937176 - 13937331
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac 264  Q
    |||||| ||| ||| |||| ||||||||||||   |||||| | ||||||||||||| |||||||||||||||||||||| |||  ||||||||||||||    
13937176 aacaaaaaaatatggaataaattaacaccaaatcgtaattgctgcagcataagatgtgccataacaatcacggagagaaatacaaactagtcaatgatac 13937275  T
265 aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata 320  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||    
13937276 aagacagttagtcgatacccatacaaatgagcgggttcgaccaccaattatgaata 13937331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 165 - 320
Target Start/End: Original strand, 52254994 - 52255145
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatac 264  Q
    ||||||||||||||||||||| ||||| ||||   |||||| | ||||| |||||||  ||||||||||||| ||||||| |||  ||||||||||||||    
52254994 aacaaacaaaaatgaaatatagtaacatcaaatcgtaattgctgcagcacaagatgtgtcataacaatcacgaagagaaatacaaactagtcaatgatac 52255093  T
265 aagacagttagtcgatatccatacatatgagcgggttcgatcaccaattataaata 320  Q
    ||||||||||||||||| ||||||| ||||||| ||    ||||||||||||||||    
52255094 aagacagttagtcgatacccatacaaatgagcgagt----tcaccaattataaata 52255145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 313
Target Start/End: Original strand, 2490687 - 2490836
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgata 263  Q
    ||||| |||||||| ||||||||| ||||||  |  |||||||| ||||||||| ||| || ||||||| ||  |||||||||||   ||||||| ||||    
2490687 aacaatcaaaaatggaatatattatcaccaatgatgtaattgttgcagcataaggtgtgccttaacaattacatagagaaacacagagtagtcaaagata 2490786  T
264 caagacagttagtcgatatccatacatatgagcgggttcgatcaccaatt 313  Q
    |||| ||||||||||||| ||||||| |||||||||||||| ||||||||    
2490787 caaggcagttagtcgatacccatacaaatgagcgggttcgaccaccaatt 2490836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 315
Target Start/End: Original strand, 6477994 - 6478145
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaa-taattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgata 263  Q
    |||||| ||||||| |||||| |||||||||  |  |||||||||||||||||| ||||||||||||||||| || |||||||||  |||||||  | ||    
6477994 aacaaataaaaatggaatataataacaccaataacgtaattgttacagcataaggtgtaccataacaatcacagaaagaaacacagtctagtcagagtta 6478093  T
264 caagacagttagtcgatatccatacatatgagcgggttcgatcaccaattat 315  Q
    ||| ||| |||||||||| |||||||  ||| ||| ||||| ||||||||||    
6478094 caatacaattagtcgatacccatacaattgaacggattcgaccaccaattat 6478145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 10308178 - 10308084
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaat 259  Q
    |||||||||||||| |||||||||||||||||   |||||| | ||||| ||||||| ||||||||||||| ||||||||||||  |||||||||    
10308178 aacaaacaaaaatggaatatattaacaccaaatcgtaattgctgcagcacaagatgtgccataacaatcaccgagagaaacacaaactagtcaat 10308084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 315
Target Start/End: Complemental strand, 12258109 - 12257965
Alignment:
172 aaaaatgaaatatattaacacc-aaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatacaagaca 270  Q
    |||||||||||||||||||| | |||   |||||||| ||||||||| ||| ||  |||||||||| | |||||||||  ||||||| |  ||||| | |    
12258109 aaaaatgaaatatattaacatcgaaagcgtaattgttgcagcataagttgtgcctaaacaatcacgaaaagaaacacagtctagtcagtattacaaaata 12258010  T
271 gttagtcgatatccatacatatgagcgggttcgatcaccaattat 315  Q
    || ||||||||  |||||||| |||||||||||| ||||| ||||    
12258009 gtcagtcgatactcatacataagagcgggttcgaccaccagttat 12257965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 315
Target Start/End: Complemental strand, 12265501 - 12265357
Alignment:
172 aaaaatgaaatatattaacacc-aaacaataattgttacagcataagatgtaccataacaatcacggagagaaacacatgctagtcaatgatacaagaca 270  Q
    |||||||||||||||||||| | |||   |||||||| ||||||||| ||| ||  |||||||||| | |||||||||  ||||||| |  ||||| | |    
12265501 aaaaatgaaatatattaacatcgaaagcgtaattgttgcagcataagttgtgcctaaacaatcacgaaaagaaacacagtctagtcagtattacaaaata 12265402  T
271 gttagtcgatatccatacatatgagcgggttcgatcaccaattat 315  Q
    || ||||||||  |||||||| |||||||||||| ||||| ||||    
12265401 gtcagtcgatactcatacataagagcgggttcgaccaccagttat 12265357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 196
Target Start/End: Original strand, 30355815 - 30355846
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaa 196  Q
    ||||||||||||||||||||||||||||||||    
30355815 aacaaacaaaaatgaaatatattaacaccaaa 30355846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 42562933 - 42563013
Alignment:
165 aacaaacaaaaatgaaatatattaacaccaaacaa--taattgttacagcataagatgtaccataacaatcacggagagaaa 244  Q
    |||||||||||||||||||||||||||||  ||||  |||||| | ||||||||| |||   |||||||||||||| |||||    
42562933 aacaaacaaaaatgaaatatattaacacc-gacaacgtaattgatgcagcataaggtgtgttataacaatcacggaaagaaa 42563013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 15391728 - 15391769
Alignment:
274 agtcgatatccatacatatgagcgggttcgatcaccaattat 315  Q
    |||||||| ||||||||| |||||||||||| ||||||||||    
15391728 agtcgatacccatacataagagcgggttcgaccaccaattat 15391769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University