View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18689_low_14 (Length: 365)

Name: NF18689_low_14
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18689_low_14
NF18689_low_14
[»] chr3 (16 HSPs)
chr3 (120-365)||(9837995-9838240)
chr3 (120-365)||(9848873-9849118)
chr3 (112-239)||(10031077-10031204)
chr3 (127-239)||(9837797-9837907)
chr3 (127-239)||(9848675-9848785)
chr3 (147-239)||(10126053-10126145)
chr3 (105-243)||(10657875-10658010)
chr3 (105-239)||(10662590-10662721)
chr3 (126-239)||(11768381-11768494)
chr3 (112-174)||(10183339-10183401)
chr3 (162-229)||(10259863-10259930)
chr3 (156-204)||(10516626-10516674)
chr3 (168-239)||(10076299-10076370)
chr3 (327-365)||(10376535-10376573)
chr3 (142-174)||(10434963-10434995)
chr3 (141-174)||(10439821-10439854)
[»] scaffold0083 (1 HSPs)
scaffold0083 (154-239)||(50705-50790)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 120 - 365
Target Start/End: Original strand, 9837995 - 9838240
Alignment:
Q  120 tgtacataaagattccgattgctttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgat 219  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9837995 tgtacataaagattccgattattttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgtt 9838094  T
Q  220 aagctttgctttccagcttttaaaaacattatattgtccattcattcacatgcttagtagagatacttgcttcaaaattctgctattagctacacatttc 319  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838095 aagctttgctttccagcttttcaaaacattatattgtccattcattcacatgcttagtagagatacttgcttcaaaattctgctattagctacacatttc 9838194  T
Q  320 atactacctgatttgcttttacaagatcaacagaagatggctgcaa 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9838195 atactacctgatttgcttttacaagatcaacagaagatggctgcaa 9838240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 120 - 365
Target Start/End: Original strand, 9848873 - 9849118
Alignment:
Q  120 tgtacataaagattccgattgctttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgat 219  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9848873 tgtacataaagattccgattattttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgtt 9848972  T
Q  220 aagctttgctttccagcttttaaaaacattatattgtccattcattcacatgcttagtagagatacttgcttcaaaattctgctattagctacacatttc 319  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9848973 aagctttgctttccagcttttcaaaacattatattgtccattcattcacatgcttagtagagatacttgcttcaaaattctgctattagctacacatttc 9849072  T
Q  320 atactacctgatttgcttttacaagatcaacagaagatggctgcaa 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9849073 atactacctgatttgcttttacaagatcaacagaagatggctgcaa 9849118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 10031077 - 10031204
Alignment:
Q  112 agtaaaaatgtacataaagattccgattgctttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaa 211  Q
    ||||||| || ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10031077 agtaaaagtggacataaagattccgattgctttagttgagtgtggaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaa 10031176  T
Q  212 acaatgataagctttgctttccagcttt 239  Q
    |||||||| |||||||||||||||||||    
T  10031177 acaatgatgagctttgctttccagcttt 10031204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 9837797 - 9837907
Alignment:
Q  127 aaagattccgattgctttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagcttt 226  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  9837797 aaagattccgatggctttaattgagtgtgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagcttt 9837894  T
Q  227 gctttccagcttt 239  Q
    |||||||||||||    
T  9837895 gctttccagcttt 9837907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 9848675 - 9848785
Alignment:
Q  127 aaagattccgattgctttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagcttt 226  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  9848675 aaagattccgatggctttaattgagtgtgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagcttt 9848772  T
Q  227 gctttccagcttt 239  Q
    |||||||||||||    
T  9848773 gctttccagcttt 9848785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 10126053 - 10126145
Alignment:
Q  147 ttgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 239  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  10126053 ttgagtgtgcaactttttcttttgctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgacctttgctttccagcttt 10126145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 10657875 - 10658010
Alignment:
Q  105 ttcctaaagtaaaaatgtacataaagattccgattgctttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtcca 204  Q
    ||||||||||||||||||||| | |||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||     
T  10657875 ttcctaaagtaaaaatgtacacagagattcagatttctttaattgagtgtgtaacttttcctttttctttgtatcaattattttgaaggatgtgggtcc- 10657973  T
Q  205 atattaaacaatgataagctttgctttccagcttttaaa 243  Q
      ||||| || |||| | |||||||||||||||||||||    
T  10657974 --attaatcactgatgacctttgctttccagcttttaaa 10658010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 10662590 - 10662721
Alignment:
Q  105 ttcctaaagtaaaaatgtacataaagattccgattgctttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtcca 204  Q
    ||||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||     
T  10662590 ttcctaaagtaaaaatgtacacagagattcagatttctttaattgagtgtgcaacttttcctttttctttgtattaattattttgaaggatgtgggtcc- 10662688  T
Q  205 atattaaacaatgataagctttgctttccagcttt 239  Q
      ||||| || |||| | |||||||||||||||||    
T  10662689 --attaatcactgatgaactttgctttccagcttt 10662721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 11768381 - 11768494
Alignment:
Q  126 taaagattccgattgctttaattgagtgtgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctt 225  Q
    |||||||| ||||  |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| | | |||    
T  11768381 taaagatttcgatgcctttaattaagtgtgcaacttttcctttttctttgtatcaattattttgtgggatgtaggtccaatattaaccaatggtgaactt 11768480  T
Q  226 tgctttccagcttt 239  Q
    |||||||| |||||    
T  11768481 tgctttcccgcttt 11768494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 10183339 - 10183401
Alignment:
Q  112 agtaaaaatgtacataaagattccgattgctttaattgagtgtgcaactttttctttttcttt 174  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10183339 agtaaaagtgtacataaagattccgattgctttaattgagtgtgcaactttttctttttcttt 10183401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 10259863 - 10259930
Alignment:
Q  162 tttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgct 229  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||    
T  10259863 tttcttttgctttgtatcaattattttgaaggatgtgggtccaatattaaacaatgatgacctttgct 10259930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 10516626 - 10516674
Alignment:
Q  156 caactttttctttttctttgtatcaattattttgagggatgtgggtcca 204  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  10516626 caacttttcctttttctttgtatcaattattttgaaggatgtgggtcca 10516674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 10076299 - 10076370
Alignment:
Q  168 tttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 239  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| || |  | |||||| ||||||||||||    
T  10076299 tttccttgtatcaattattttgtgggatgtgggtccaatattaaccactactgagctttactttccagcttt 10076370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 10376573 - 10376535
Alignment:
Q  327 ctgatttgcttttacaagatcaacagaagatggctgcaa 365  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10376573 ctgatttgcttttacaagatcaacagaagatggctgcaa 10376535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 10434995 - 10434963
Alignment:
Q  142 tttaattgagtgtgcaactttttctttttcttt 174  Q
    |||||||||||||||||||||||||||||||||    
T  10434995 tttaattgagtgtgcaactttttctttttcttt 10434963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 10439821 - 10439854
Alignment:
Q  141 ctttaattgagtgtgcaactttttctttttcttt 174  Q
    |||||||||||||| |||||||||||||||||||    
T  10439821 ctttaattgagtgtacaactttttctttttcttt 10439854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 50790 - 50705
Alignment:
Q  154 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgataagctttgctttccagcttt 239  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| || || | |||||||||||||||||||    
T  50790 tgcaatttttcctttttctttgtatcaattattttgtgggatgtgggtccaatattaaccactgctgagctttgctttccagcttt 50705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University