View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_low_18 (Length: 332)
Name: NF18689_low_18
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 33116793 - 33116549
Alignment:
| Q |
18 |
gtgaaaagaacagtatatagagagccaatccgatcagtgcaagccaacccaatttgctaggacatccttgtgtataccatgatctgtgtcctttttgaca |
117 |
Q |
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| T |
33116793 |
gtgaaaagaacagtatatagagagccaatccaatcagtgcaagccaacccaatttgctaggacatccttgtgtataccatgatctgtgtcctttttgaca |
33116694 |
T |
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| Q |
118 |
ttggttctttgtcatgtcatttgagatcaagcatgcacctggtaacagctgcatatataatactcttgattagctatcatgcaaagtttatggaaatgag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33116693 |
ttggttctttgtcatgtcatttgagatcaagcatgcacctggtaacagctgcatatataatactcttgattagctatcatgcaaattttatggaaatgag |
33116594 |
T |
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| Q |
218 |
ttaaaaatggcctatggaaagaggaagattgcatatttaccttgt |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33116593 |
ttaaaaatggcctatggaaagaggaagattgcatatttaccttgt |
33116549 |
T |
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Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 1083768 - 1083864
Alignment:
| Q |
219 |
taaaaatggcctatggaaagaggaagattgcatatttaccttgttagagtcagatgcacaaaatccacattttggtgaagcctttaaacacgttgtg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1083768 |
taaaaatggcctatggaaagaggaagattgcatatttaccttgttagagtcagatgcacaaaatccacattttggtgaagcctttaaacacgttgtg |
1083864 |
T |
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