View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18689_low_19 (Length: 324)

Name: NF18689_low_19
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18689_low_19
NF18689_low_19
[»] chr5 (14 HSPs)
chr5 (24-308)||(40786654-40786958)
chr5 (238-308)||(24228363-24228433)
chr5 (91-184)||(29742029-29742119)
chr5 (238-308)||(24213370-24213440)
chr5 (188-238)||(24228292-24228342)
chr5 (98-184)||(32928939-32929022)
chr5 (183-238)||(24213294-24213349)
chr5 (243-304)||(35074208-35074269)
chr5 (122-184)||(24213214-24213273)
chr5 (245-307)||(19479552-19479614)
chr5 (98-156)||(31108917-31108975)
chr5 (156-184)||(24228239-24228267)
chr5 (101-133)||(28663533-28663565)
chr5 (190-238)||(31109011-31109058)
[»] chr8 (5 HSPs)
chr8 (24-132)||(15007260-15007368)
chr8 (91-184)||(22274915-22275005)
chr8 (244-308)||(29185623-29185687)
chr8 (96-156)||(28350468-28350528)
chr8 (184-231)||(29185542-29185589)
[»] chr3 (7 HSPs)
chr3 (238-308)||(13639625-13639695)
chr3 (238-308)||(7642327-7642396)
chr3 (238-308)||(21587214-21587284)
chr3 (128-184)||(38419988-38420041)
chr3 (189-238)||(13639716-13639765)
chr3 (238-308)||(20458842-20458911)
chr3 (192-232)||(20458775-20458815)
[»] chr2 (8 HSPs)
chr2 (238-308)||(25232019-25232089)
chr2 (243-308)||(25225714-25225779)
chr2 (101-184)||(7394643-7394723)
chr2 (245-308)||(19912301-19912364)
chr2 (184-231)||(25232117-25232164)
chr2 (237-308)||(45276372-45276443)
chr2 (102-156)||(19084695-19084749)
chr2 (183-229)||(25225814-25225860)
[»] chr6 (1 HSPs)
chr6 (238-308)||(19441220-19441290)
[»] chr1 (16 HSPs)
chr1 (238-308)||(18640580-18640649)
chr1 (238-308)||(29547776-29547846)
chr1 (122-184)||(27417327-27417390)
chr1 (238-308)||(29530121-29530191)
chr1 (116-184)||(36686843-36686908)
chr1 (33-132)||(26023656-26023756)
chr1 (248-308)||(32808800-32808859)
chr1 (238-308)||(28201725-28201796)
chr1 (243-304)||(18643285-18643346)
chr1 (183-231)||(11444036-11444084)
chr1 (119-184)||(11443954-11444016)
chr1 (190-225)||(18643228-18643263)
chr1 (183-232)||(11441667-11441716)
chr1 (96-179)||(18643116-18643196)
chr1 (122-184)||(11441588-11441647)
chr1 (190-238)||(15552979-15553026)
[»] chr4 (5 HSPs)
chr4 (104-184)||(12753587-12753664)
chr4 (101-184)||(17350010-17350090)
chr4 (237-308)||(26654462-26654533)
chr4 (122-158)||(28874334-28874370)
chr4 (122-158)||(46694139-46694174)
[»] scaffold0066 (1 HSPs)
scaffold0066 (122-184)||(11794-11853)
[»] chr7 (2 HSPs)
chr7 (122-184)||(42939966-42940025)
chr7 (238-308)||(42129529-42129599)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 24 - 308
Target Start/End: Complemental strand, 40786958 - 40786654
Alignment:
Q  24 acattttctatacgtacaagcatacaacacaataagttctatcataaaaaacaagaattagtattacctcaaattggtagagcttcgtgccgataacgtg 123  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||  |||| |||    
T  40786958 acattttctatacgtacaagcatacaacacaataagttatatcataaaaaacaagaattagtattacctcaaattggcatagcttcgtgctcataatgtg 40786859  T
Q  124 ttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagag---------------------aagagtgtattgtattactt 202  Q
    ||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||                     ||||||||||||||||||||    
T  40786858 ttatgaaattgattcttagcattgcaagata---ttataaagtatataagaatagagagaaagaaacaaagagagaacataagagtgtattgtattactt 40786762  T
Q  203 cacaagtgtgttatttacattacaatatagatcctaagtaaatgatcaaaccaattaaggaccac--taaccatacatttactactgagggttataggaa 300  Q
    |||||||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||  ||||||||||||||||| || ||||||||||||    
T  40786761 cacaagtgtgttctttacattacaatataggtcctaagtgaatgatcaaatcaattaaggaccactataaccatacatttactaatgggggttataggaa 40786662  T
Q  301 ggtggaag 308  Q
    ||||||||    
T  40786661 ggtggaag 40786654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 24228363 - 24228433
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| |||||||||||||||||| ||||| ||||||||||| || || |||||||||||||||||||||||    
T  24228363 aagtgaatgatcaaaccaattaaagaccaataaccatacatatattaatgagggttataggaaggtggaag 24228433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 29742029 - 29742119
Alignment:
Q  91 ctcaaattggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    |||| |||| ||||||||||||| ||||||||||||||||||| ||||   |||||||||   | |||| ||||||||||||||||||||||||    
T  29742029 ctcagattgatagagcttcgtgctgataacgtgttatgaaattaatccaatgcattgcaa---aatattgtaaagtatataagaatagagagaa 29742119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 24213370 - 24213440
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||| ||  ||||||| |||||||||||    
T  24213370 aagtgaatgatcaaaccaattaaagaccaataaccatacatttactaatggaggttataagaaggtggaag 24213440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 24228292 - 24228342
Alignment:
Q  188 tgtattgtattacttcacaagtgtgttatttacattacaatatagatccta 238  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  24228292 tgtattgtattacttcacaagtgtgtactttacattacaatatagatccta 24228342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 32929022 - 32928939
Alignment:
Q  98 tggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    ||||| |||||||||  ||||||||||| ||||||||||| ||| ||||||||||   ||| |||||| ||||||||||||||||||    
T  32929022 tggtaaagcttcgtgttgataacgtgttttgaaattgatcattaacattgcaaga---tatcataaagcatataagaatagagagaa 32928939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 24213294 - 24213349
Alignment:
Q  183 aagagtgtattgtattacttcacaagtgtgttatttacattacaatatagatccta 238  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||    
T  24213294 aagagtgtattgtattacttcacaagtatgtactttacattacaatataggtccta 24213349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 35074208 - 35074269
Alignment:
Q  243 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtg 304  Q
    |||||||||| ||||||||||||||||| |||||||| |||| ||||  |||||||||||||    
T  35074208 aatgatcaaagcaattaaggaccactaatcatacattcactagtgagaattataggaaggtg 35074269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 24213214 - 24213273
Alignment:
Q  122 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    |||||||||||||||||||||||||| ||||   ||||||||||||||||| | |||||||||    
T  24213214 tgttatgaaattgatccttagcattgtaaga---tattataaagtatataacattagagagaa 24213273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 19479552 - 19479614
Alignment:
Q  245 tgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaa 307  Q
    |||||||  ||||||||| |||||||| || || |||||| |||| |||||||||||||||||    
T  19479552 tgatcaaggcaattaaggtccactaactattcacttactaatgagagttataggaaggtggaa 19479614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 31108917 - 31108975
Alignment:
Q  98 tggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatatt 156  Q
    ||||||||| || | ||||||||||||||||||||| |||  ||||||||||| |||||    
T  31108917 tggtagagcatcataccgataacgtgttatgaaattaatctatagcattgcaaaatatt 31108975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 24228239 - 24228267
Alignment:
Q  156 tattataaagtatataagaatagagagaa 184  Q
    |||||||||||||||||||||||||||||    
T  24228239 tattataaagtatataagaatagagagaa 24228267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 28663533 - 28663565
Alignment:
Q  101 tagagcttcgtgccgataacgtgttatgaaatt 133  Q
    ||||||||||||| |||||||||||||||||||    
T  28663533 tagagcttcgtgctgataacgtgttatgaaatt 28663565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 31109011 - 31109058
Alignment:
Q  190 tattgtattacttcacaagtgtgttatttacattacaatatagatccta 238  Q
    |||| ||||||||||||||||||| | ||||||| ||||||||||||||    
T  31109011 tattatattacttcacaagtgtgtca-ttacattgcaatatagatccta 31109058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 15007368 - 15007260
Alignment:
Q  24 acattttctatacgtacaagcatacaacacaataagttctatcataaaaaacaagaattagtattacctcaaattggtagagcttcgtgccgataacgtg 123  Q
    |||||||||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  15007368 acattttctatacgtacaagcatacagcacaattagttatataataaaaaacaagaattagtattacctcaaattgatagagcttcgtgctgagaacgtg 15007269  T
Q  124 ttatgaaat 132  Q
    |||||||||    
T  15007268 ttatgaaat 15007260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 22275005 - 22274915
Alignment:
Q  91 ctcaaattggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    |||| |||| ||||||||||||  ||||||||||||||||||| ||||  ||||||||||||   |||| ||||||||||||||||||||||||    
T  22275005 ctcatattgatagagcttcgtgttgataacgtgttatgaaattaatccaaagcattgcaaga---tattgtaaagtatataagaatagagagaa 22274915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 29185623 - 29185687
Alignment:
Q  244 atgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||||||||| ||||||||||||| ||||||| |||||||| || || |||||||||||||||||    
T  29185623 atgatcaaacgaattaaggaccacaaaccatatatttactaatggggattataggaaggtggaag 29185687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 28350468 - 28350528
Alignment:
Q  96 attggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatatt 156  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||  || |||||||||||||    
T  28350468 attgatagagcttcgtgctgataacgtgttatgaaattaatccaaagtattgcaagatatt 28350528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 29185542 - 29185589
Alignment:
Q  184 agagtgtattgtattacttcacaagtgtgttatttacattacaatata 231  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  29185542 agagtatattgcattacttcacaagtgtgttttttacattacaatata 29185589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 13639695 - 13639625
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||    
T  13639695 aagtgaatgatcaaaccaattaaggaccactaaccatacatttactaacgaaggttataggaaggtggaag 13639625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 7642396 - 7642327
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||||||||||||||  ||||||||||||||||||||| ||| |||| || ||||||||||||||||||||    
T  7642396 aagtaaatgatcaaagtaattaaggaccactaaccataaattcactaatg-gggttataggaaggtggaag 7642327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 21587214 - 21587284
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| |||||||||| || ||||||| |||||||||||| || |||| || ||||||||||||||||||||    
T  21587214 aagtgaatgatcaaagcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaag 21587284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 38420041 - 38419988
Alignment:
Q  128 gaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    |||||||||||||| ||||||||||||   ||||||||||| |||||||||||||||    
T  38420041 gaaattgatccttaacattgcaagata---ttataaagtatgtaagaatagagagaa 38419988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 13639765 - 13639716
Alignment:
Q  189 gtattgtattacttcacaagtgtgttatttacattacaatatagatccta 238  Q
    ||||||||||  |||||||||||||| ||||||||||||||||| |||||    
T  13639765 gtattgtattgtttcacaagtgtgttctttacattacaatataggtccta 13639716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 20458842 - 20458911
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| |||||||||| || ||||||  ||||||||| ||||| |||| || ||||||||||||||||||||    
T  20458842 aagtgaatgatcaaaacatttaaggttcactaaccaaacattcactaatg-gggttataggaaggtggaag 20458911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 20458775 - 20458815
Alignment:
Q  192 ttgtattacttcacaagtgtgttatttacattacaatatag 232  Q
    ||||||| |||| |||||||||| |||||||||||||||||    
T  20458775 ttgtattgcttctcaagtgtgttctttacattacaatatag 20458815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 25232089 - 25232019
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||    
T  25232089 aagtgaatgatcaaaccaattaaggaccactaaccatacatttactaatgggagttataggaaggtggaag 25232019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 25225779 - 25225714
Alignment:
Q  243 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    ||||||||||||||||||| | |||||||||||||||||||| |||| |||||| |||||||||||    
T  25225779 aatgatcaaaccaattaagaatcactaaccatacatttactaatgagagttatatgaaggtggaag 25225714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 7394643 - 7394723
Alignment:
Q  101 tagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    ||||| ||||||| ||||||||||||||||||| ||||  |||||||| |||   ||||||||||||||||| |||||||||||    
T  7394643 tagagtttcgtgctgataacgtgttatgaaattaatccaaagcattgctaga---tattataaagtatataaaaatagagagaa 7394723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 19912364 - 19912301
Alignment:
Q  245 tgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||||||| ||||||||||| |||||||||||||| | || |  ||||||||||||||||||||    
T  19912364 tgatcaaagcaattaaggactactaaccatacattcaataataggggttataggaaggtggaag 19912301  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 25232164 - 25232117
Alignment:
Q  184 agagtgtattgtattacttcacaagtgtgttatttacattacaatata 231  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||    
T  25232164 agagtgtattgtattgcttctcaagtgtgttctttacattacaatata 25232117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 45276443 - 45276372
Alignment:
Q  237 taagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    ||||| |||| ||||| | |||||||||||||||||||||||| ||||    ||||||||||||||||||||    
T  45276443 taagtgaatggtcaaaactattaaggaccactaaccatacattcactaacatgggttataggaaggtggaag 45276372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 19084749 - 19084695
Alignment:
Q  102 agagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatatt 156  Q
    |||||||||||| |||||||||||||||||||||||   || |||||||||||||    
T  19084749 agagcttcgtgctgataacgtgttatgaaattgatcaaaagtattgcaagatatt 19084695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 25225860 - 25225814
Alignment:
Q  183 aagagtgtattgtattacttcacaagtgtgttatttacattacaata 229  Q
    |||||||||||||||| |||| ||| |||||| ||||||||||||||    
T  25225860 aagagtgtattgtattgcttctcaactgtgttctttacattacaata 25225814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 19441220 - 19441290
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||| | || ||||||||||||||||||||    
T  19441220 aagtgaatgatcaaaccatttaaggaccactaaccatagatttaccaatgggggttataggaaggtggaag 19441290  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 18640580 - 18640649
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| |||||||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  18640580 aagtgaatgatcaaagcaattaaggaccactaaccatacattcactaatga-ggttataggaaggtggaag 18640649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 29547846 - 29547776
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||| || || |||||||||||||||||    
T  29547846 aagtgaatgatcaaacaaattaaggaccactaaccatgcatttactaatggggattataggaaggtggaag 29547776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 27417327 - 27417390
Alignment:
Q  122 tgttatgaaattgatccttagcattgcaagatatta-ttataaagtatataagaatagagagaa 184  Q
    |||||||||||||||| ||||||||||||| |||||  || |||||||||||||||||||||||    
T  27417327 tgttatgaaattgatcattagcattgcaagctattacgtacaaagtatataagaatagagagaa 27417390  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 29530191 - 29530121
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||  || || ||| ||||| |||||||    
T  29530191 aagtgaatgatcaaaccaattaaggaccactaaccatgcatttactgatggggtttacaggaaagtggaag 29530121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 36686908 - 36686843
Alignment:
Q  116 ataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    ||||||||||||||||||||| ||||  |||||||||||   ||||||||||||||| |||||||||||    
T  36686908 ataacgtgttatgaaattgattcttaatattgcaagata---ttataaagtatataaaaatagagagaa 36686843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 26023756 - 26023656
Alignment:
Q  33 atacgtacaagcatacaacacaataagttctatcataaaaaacaagaattagtattacctca-aattggtagagcttcgtgccgataacgtgttatgaaa 131  Q
    |||||||||| |||||| |||| |||||  |||||| |||||||| |||  ||||||||||| | ||| |||||||| |||| |||||||||||| ||||    
T  26023756 atacgtacaaacatacatcacattaagtaatatcatgaaaaacaaaaatcggtattacctcagatttgatagagcttagtgctgataacgtgttaagaaa 26023657  T
Q  132 t 132  Q
    |    
T  26023656 t 26023656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 32808859 - 32808800
Alignment:
Q  248 tcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||||||    
T  32808859 tcaaatcaattaaggaccactaaccatatattcactaatg-gggttataggaaggtggaag 32808800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 28201725 - 28201796
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactact-gagggttataggaaggtggaag 308  Q
    |||| ||| |||||| ||||||| ||| |||||||||||||| |||| | ||||||||||||||||||||||    
T  28201725 aagtgaattatcaaagcaattaaagactactaaccatacattcactaatggagggttataggaaggtggaag 28201796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 18643285 - 18643346
Alignment:
Q  243 aatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtg 304  Q
    |||||||||| |||||||||||||||||||||||| | |||| || || |||||| ||||||    
T  18643285 aatgatcaaagcaattaaggaccactaaccatacagtcactaatggggattatagaaaggtg 18643346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 11444036 - 11444084
Alignment:
Q  183 aagagtgtattgtattacttcacaagtgtgttatttacattacaatata 231  Q
    |||||| |||||||||||||||||||||||| ||| |||||| ||||||    
T  11444036 aagagtatattgtattacttcacaagtgtgtaattcacattataatata 11444084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 11443954 - 11444016
Alignment:
Q  119 acgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    |||| ||||||||||||| |||||||||| || |||||   ||||||||||||| |||||||||||    
T  11443954 acgtattatgaaattgattcttagcattgtaatatatt---ataaagtatataataatagagagaa 11444016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 18643228 - 18643263
Alignment:
Q  190 tattgtattacttcacaagtgtgttatttacattac 225  Q
    ||||||||||||||||||||||||| ||||||||||    
T  18643228 tattgtattacttcacaagtgtgttctttacattac 18643263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 11441667 - 11441716
Alignment:
Q  183 aagagtgtattgtattacttcacaagtgtgttatttacattacaatatag 232  Q
    |||| ||||||||||||| ||| |||||||| ||| ||||||||||||||    
T  11441667 aagaatgtattgtattacctcataagtgtgtaattcacattacaatatag 11441716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 18643116 - 18643196
Alignment:
Q  96 attggtagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaataga 179  Q
    |||||||||||||| ||| |||||| ||||||||||||||| |  |  ||| |||||   |||| |||||||||||||||||||    
T  18643116 attggtagagcttcatgctgataacatgttatgaaattgattcaaaatattacaaga---tattgtaaagtatataagaataga 18643196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 11441588 - 11441647
Alignment:
Q  122 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    |||| ||||||||||  ||||||||||||||   |||||| |||||||||| |||||||||||    
T  11441588 tgttgtgaaattgatttttagcattgcaaga---tattatgaagtatataataatagagagaa 11441647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 15553026 - 15552979
Alignment:
Q  190 tattgtattacttcacaagtgtgttatttacattacaatatagatccta 238  Q
    |||||||||||||||||||||||| | ||||||| |||||||| |||||    
T  15553026 tattgtattacttcacaagtgtgtca-ttacattgcaatataggtccta 15552979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 12753587 - 12753664
Alignment:
Q  104 agcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    |||||||||| ||||||||||||||||||| ||||  |||||||| |||   |||| ||||||||||||||||||||||||    
T  12753587 agcttcgtgctgataacgtgttatgaaattaatccagagcattgctaga---tattgtaaagtatataagaatagagagaa 12753664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 17350090 - 17350010
Alignment:
Q  101 tagagcttcgtgccgataacgtgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    ||||||||||||| |||||||||||||||||||||||   || |||||||||   |||| |||||||||||||| |||||||||    
T  17350090 tagagcttcgtgctgataacgtgttatgaaattgatcaaaagtattgcaaga---tattgtaaagtatataagagtagagagaa 17350010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 26654533 - 26654462
Alignment:
Q  237 taagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    ||||| ||| |||||| |||||||||||||||||||||||||| || |  || |||||||||||||||||||    
T  26654533 taagtgaataatcaaagcaattaaggaccactaaccatacattcaccaacgatggttataggaaggtggaag 26654462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 28874370 - 28874334
Alignment:
Q  122 tgttatgaaattgatccttagcattgcaagatattat 158  Q
    |||||||||||||||||||| ||||||||||||||||    
T  28874370 tgttatgaaattgatccttaacattgcaagatattat 28874334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 46694139 - 46694174
Alignment:
Q  122 tgttatgaaattgatccttagcattgcaagatattat 158  Q
    ||||||||||||||||||||||| |||||||||||||    
T  46694139 tgttatgaaattgatccttagca-tgcaagatattat 46694174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 11853 - 11794
Alignment:
Q  122 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||| | ||||||    
T  11853 tgttatgaaattgatccttagcattgcaagata---ttataaagtatataagaacaaagagaa 11794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 42940025 - 42939966
Alignment:
Q  122 tgttatgaaattgatccttagcattgcaagatattattataaagtatataagaatagagagaa 184  Q
    |||||||||||| ||||  |||||||||||||||| |   |||||||||||||||||||||||    
T  42940025 tgttatgaaattaatccaaagcattgcaagatattgt---aaagtatataagaatagagagaa 42939966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 42129599 - 42129529
Alignment:
Q  238 aagtaaatgatcaaaccaattaaggaccactaaccatacatttactactgagggttataggaaggtggaag 308  Q
    |||| ||||||||||  ||||||||| || |||||||| ||| |||| |  ||||||||||||||||||||    
T  42129599 aagtgaatgatcaaagaaattaaggatcattaaccatatattcactaataggggttataggaaggtggaag 42129529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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