View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_low_2 (Length: 737)
Name: NF18689_low_2
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 36959806 - 36960355
Alignment:
| Q |
1 |
ccttagcatcattcagtaccatgcatcttcgctagccaagcatgtaagccaagaatcgcaataatttatgttctcaaaaggaaatcagttcatgtgctta |
100 |
Q |
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| T |
36959806 |
ccttagcatcattcagtaccatgcatcttcgctagccaagcatgtaagccaagaatcgcaataatttatgttctcaaaaggaaatcagttcatgtgctta |
36959905 |
T |
|
| Q |
101 |
gcctgcacgagtgaacatagtgaatgcccataactatctttcaagcgagaaaatacaaacaagttattattagagtgaattatcattttggtccaaaaat |
200 |
Q |
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| T |
36959906 |
gcctgcacgagtgaagatagtgaatgcccataactatctttcaagcgagaaaatacaaacaagttattattagagtgaattatcattttggtccaaaaat |
36960005 |
T |
|
| Q |
201 |
atgcgaggctgtgtgtgtcactatagttctaaaatatatcaaaattataataacatccttgactatgccattttctaataattttgttgtttaaattgac |
300 |
Q |
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| T |
36960006 |
atgcgaggctgtgtgtgtcactatagttctaaaatatatcaaaattataataacatccttgactatgccattttctaatgatttcgttgtttaaattgac |
36960105 |
T |
|
| Q |
301 |
caacataagagaaatttgaagatcaaactaacaaagaaataatacattcgagaatcatactcattaataacaaacacattcaagatgtttttataattta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36960106 |
caacataagagaaatttgaagatcaaactaacaaagaaataatacattcgagaatcatactcattaataacaaacacattcaagatgtttttataattta |
36960205 |
T |
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| Q |
401 |
aattcattccatcaatgattatagtgagagcgcttgacatatttaaagatcgaaatgactttttatttattagctagttagnnnnnnnattaaaaatact |
500 |
Q |
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| T |
36960206 |
aattcattccatcaatgattatagtgagagcgcttgacatatttaaagatcgaaatgactttttatttattagctagttagttttttgattaaaaatact |
36960305 |
T |
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| Q |
501 |
atgatccgatttggttttattttggaatggaatgaagaagcaacaatcat |
550 |
Q |
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| T |
36960306 |
atgatccgatttggttttattttggaatggaatgaagaagcaacaatcat |
36960355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 568 - 725
Target Start/End: Original strand, 36960399 - 36960556
Alignment:
| Q |
568 |
cactaacattaaattacagacattttcttgatatcaaatgtaaaattgacatcaaggcctctttgatctaattattctctgccttttgcaaagcaaaatc |
667 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36960399 |
cactaacattaaattacagacattttcttgatatcaaatgtaaaattgacatcaaggcctctttgatctaattattctctgccttttgcaaagcaaaatc |
36960498 |
T |
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| Q |
668 |
cttcaaaattcaaatacactttttattttgaattctagttcatatgtacatattcttc |
725 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36960499 |
cttcaaaattcaaatacactttttattttgaattctagttcatatgtacattttcttc |
36960556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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