View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_low_22 (Length: 296)
Name: NF18689_low_22
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 116 - 287
Target Start/End: Complemental strand, 32702831 - 32702660
Alignment:
| Q |
116 |
tttttcaactaaacttttttgtgcacaatagtaaaaaatcaaacatcaaagcctcttggcacgtcattatccgacatatatcatgtaaaacaatcaatca |
215 |
Q |
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| T |
32702831 |
tttttcaactaaacttttttgtgcacaatagtaaaaaatcaaacatcaaagcctcttggcacgtcattatccgacatataacatgtaaaacaatcaatca |
32702732 |
T |
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| Q |
216 |
caaatttatattgatacaaaatttctaccgccgcttgtcaacgaccaatcttcgttatgaatctatattctt |
287 |
Q |
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| T |
32702731 |
caaatttatattgatacaaaatttctaccgccgcctgacaacgaccaatcttcgttatgaatctatattctt |
32702660 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 32703297 - 32703211
Alignment:
| Q |
1 |
cttatccaacatataatatatatttttggttatcatgatattgatacaaatgttctactatcactcggcaatgattaatcttggtta |
87 |
Q |
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| T |
32703297 |
cttatctaacttataatatatatttttggttatcatgatattgatacaaattttctacaatcactcggcaatgattaatcttggtta |
32703211 |
T |
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