View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_low_23 (Length: 294)
Name: NF18689_low_23
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 10782879 - 10783147
Alignment:
| Q |
20 |
ctggaagcctgaaacaatattggccatatagaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtgacacaatttaaccat |
119 |
Q |
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| T |
10782879 |
ctggaagcctgaaacaatattggacatatagaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtgacacaatttaaccat |
10782978 |
T |
|
| Q |
120 |
aacttcttggagtacaatttgacatcaaataatgaatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaa |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10782979 |
aacttcttggagtacagtttgacatcaaataatgaatttaataaattccgttagtgcaagatatacaaaaaatgggtatctactattgaatgcttaaaaa |
10783078 |
T |
|
| Q |
220 |
tattttcaaaacacatcaattaaaatatttttagaatgaaaacaacatagatttacctcttcttctctc |
288 |
Q |
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| T |
10783079 |
tattttcaaaacacatcaattaaaatatttttagaatgaaaacaacatagatttacctcttcttttctc |
10783147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 10782628 - 10782666
Alignment:
| Q |
245 |
tatttttagaatgaaaacaacatagatttacctcttctt |
283 |
Q |
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| T |
10782628 |
tatttttagaataaaaacaaaatagatttacctcttctt |
10782666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 112 - 288
Target Start/End: Original strand, 23438705 - 23438886
Alignment:
| Q |
112 |
ttaaccataacttcttggagtacaatttgacatcaaataatg-----aatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactatt |
206 |
Q |
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| T |
23438705 |
ttaacaatgacttcttggaatacaatttgatatcaaatattgcttctaatgtaatcaattccgttagtgcaagatatacaaaaaatgtatatctactaat |
23438804 |
T |
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| Q |
207 |
gaatgcttaaaaatattttcaaaacacatcaattaaaatatttttagaatgaaaacaacatagatttacctcttcttctctc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
23438805 |
gaatgcttaaaaatattttcaaaacacatcaattaaaatatttttagaatgaaaacaaaatagatttacctcttcttttctc |
23438886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 125 - 288
Target Start/End: Complemental strand, 23438665 - 23438497
Alignment:
| Q |
125 |
cttggagtacaatttgacatcaaataatg-----aatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaa |
219 |
Q |
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|||||| |||||||||| |||||||| || ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23438665 |
cttggaatacaatttgatatcaaatattgcttctaatgtaatcaattccgttagcgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaa |
23438566 |
T |
|
| Q |
220 |
tattttcaaaacacatcaattaaaatatttttagaatgaaaacaacatagatttacctcttcttctctc |
288 |
Q |
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||||||| ||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |||| |
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| T |
23438565 |
tattttccaaagacatcaattaaaatatttttataatgaaagcaaaatagatttacctcttcttttctc |
23438497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 133 - 288
Target Start/End: Complemental strand, 8674160 - 8674005
Alignment:
| Q |
133 |
acaatttgacatcaaataatgaatttaataaattccgttagtgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaaca |
232 |
Q |
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||||||| | |||||||| ||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8674160 |
acaatttaatatcaaatattgaatgtaatcaattccgttagcacaagatatataaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaaca |
8674061 |
T |
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| Q |
233 |
catcaattaaaatatttttagaatgaaaacaacatagatttacctcttcttctctc |
288 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |
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| T |
8674060 |
catcaattaaaatatttttagaacgaaaacaaaatagatttacctcttcttttctc |
8674005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 8674158 - 8674251
Alignment:
| Q |
192 |
tgtgtatctactattgaatgcttaaaaatattttcaaaacaca--tcaattaaaatatttttagaatgaaaacaacatagatttacctcttcttctctc |
288 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||| ||| ||||| |||||||||||||| |||||||||||||||||| |||| |
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| T |
8674158 |
tgtgtatctactattgaatgctta----tattttcaaaacacacatcaat-aaactatttctagaatgaaaacaaaatagatttacctcttcttttctc |
8674251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 50508952 - 50508870
Alignment:
| Q |
23 |
gaagcctgaaacaatattggccatatagaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtga |
105 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50508952 |
gaagcctgaaacaatattggacatatacaaaccaactcattgcatttgcatcccataacacaaactaaatattgattttgtga |
50508870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 50508350 - 50508299
Alignment:
| Q |
237 |
aattaaaatatttttagaatgaaaacaacatagatttacctcttcttctctc |
288 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||| |||| |
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| T |
50508350 |
aattaaaatatttttagaatgaaaacaaaatagatttacctcatcttttctc |
50508299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 50509248 - 50509175
Alignment:
| Q |
213 |
ttaaaaatattttcaaaacac---atcaattaaaatatttttagaatgaaaacaacatagatttacctcttctt |
283 |
Q |
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||||||| |||||||||| || || |||| || |||||||||||| ||||||| |||||||||||||||||| |
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| T |
50509248 |
ttaaaaacattttcaaaatactatatgaattgaattatttttagaataaaaacaaaatagatttacctcttctt |
50509175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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