View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_low_25 (Length: 277)
Name: NF18689_low_25
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 45018506 - 45018363
Alignment:
| Q |
19 |
ctgaagcacaatgttgttgctctactttccttgtttttatttcaactgcaaaataaattatgatttccttttatcaatacaaatcaaatttggtaccctg |
118 |
Q |
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| T |
45018506 |
ctgaagcacaatgttgttgctctactttccttgtttttatttcaactgcaaaataaataatgatttccttttatcaatacaaatcaaatttggtaccctg |
45018407 |
T |
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| Q |
119 |
cggtttacgttgacactcacacatactatgcatctaccacttgc |
162 |
Q |
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| T |
45018406 |
cggtttacgttgacactcacacataccgcgcatcaaccacttgc |
45018363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 45018289 - 45018221
Alignment:
| Q |
157 |
acttgcattttaatattgggggagaggaaaggttaatgttgcggtatcttgcattttctctttgagaga |
225 |
Q |
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| T |
45018289 |
acttgcattttaatattgtgggagaggaaaggttagtgttgcgttatcttgcattttctctttgagaga |
45018221 |
T |
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