View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_low_27 (Length: 252)
Name: NF18689_low_27
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 31068770 - 31069004
Alignment:
| Q |
1 |
ttatatcaaacttggaagactcaaaaaatactcacttggcccaggtgagaactggcatatagatttgggttttgggatgaaaacgctgttgaaatgcggc |
100 |
Q |
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| T |
31068770 |
ttatatcaaacttggaagactcaaaaaatagtcacttggcccaggtgagaactggcatatagatttgggttttgggatgaaaacgctgttgaaatgcggc |
31068869 |
T |
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| Q |
101 |
aaaaagtcgacatgcaccagtcccagataaagcctgaactgcagctattcgtttatccttgatgaactcagaatcatctccatatgccagcttcagtgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31068870 |
aaaaagtcgacatgcaccagtcccagataaagcctgaactgcagctattcgtttatccttgatgaactcagaatcatctccatatgccagcttcagtgat |
31068969 |
T |
|
| Q |
201 |
tcttcaatcatatggatgctcccaccaataggaag |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31068970 |
tcttcaatcatatggatgctcccaccaataggaag |
31069004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 27 - 235
Target Start/End: Original strand, 31075634 - 31075842
Alignment:
| Q |
27 |
aatactcacttggcccaggtgagaactggcatatagatttgggttttgggatgaaaacgctgttgaaatgcggcaaaaagtcgacatgcaccagtcccag |
126 |
Q |
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|||||| |||||| ||||||| ||||||| |||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
31075634 |
aatactgacttggaccaggtgggaactggtatatagatttgggtgttgggatgaaatcgctgttgaaatacggcgaaaagtcgacatgcaccagtcccag |
31075733 |
T |
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| Q |
127 |
ataaagcctgaactgcagctattcgtttatccttgatgaactcagaatcatctccatatgccagcttcagtgattcttcaatcatatggatgctcccacc |
226 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||| || |||||| ||||| ||||| |
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| T |
31075734 |
ataaagcctgaactgcagctattcttttatccttgatgaactcggaatcgtctccatacgccagcttcagtgattcttgaaccatatgtatgcttccacc |
31075833 |
T |
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| Q |
227 |
aataggaag |
235 |
Q |
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|||||||| |
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| T |
31075834 |
cataggaag |
31075842 |
T |
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