View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18689_low_29 (Length: 245)

Name: NF18689_low_29
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18689_low_29
NF18689_low_29
[»] chr6 (5 HSPs)
chr6 (1-182)||(6134109-6134290)
chr6 (2-70)||(2718762-2718830)
chr6 (2-66)||(2721835-2721899)
chr6 (199-238)||(6133868-6133907)
chr6 (34-70)||(9771915-9771951)
[»] chr2 (4 HSPs)
chr2 (2-70)||(42237569-42237637)
chr2 (2-70)||(11445479-11445546)
chr2 (13-65)||(12352529-12352581)
chr2 (36-70)||(44705191-44705225)
[»] chr4 (7 HSPs)
chr4 (2-56)||(4848645-4848699)
chr4 (2-64)||(5198998-5199060)
chr4 (2-70)||(16962266-16962333)
chr4 (2-70)||(21315575-21315642)
chr4 (6-70)||(49583148-49583212)
chr4 (2-68)||(46824648-46824713)
chr4 (41-70)||(29866154-29866183)
[»] chr7 (4 HSPs)
chr7 (2-70)||(6218221-6218288)
chr7 (20-70)||(24118401-24118451)
chr7 (22-68)||(2301336-2301382)
chr7 (2-63)||(8560277-8560338)
[»] chr5 (3 HSPs)
chr5 (2-70)||(37247608-37247675)
chr5 (20-70)||(23325342-23325392)
chr5 (9-65)||(21253354-21253410)
[»] scaffold0526 (1 HSPs)
scaffold0526 (3-70)||(3335-3402)
[»] scaffold0472 (1 HSPs)
scaffold0472 (2-70)||(11812-11877)
[»] chr8 (4 HSPs)
chr8 (2-68)||(3424305-3424370)
chr8 (2-68)||(27054431-27054496)
chr8 (2-63)||(7411339-7411400)
chr8 (2-70)||(18076463-18076531)
[»] chr1 (3 HSPs)
chr1 (12-68)||(26828570-26828626)
chr1 (15-55)||(16422502-16422542)
chr1 (22-70)||(24909027-24909074)
[»] chr3 (1 HSPs)
chr3 (20-68)||(32104206-32104254)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 6134290 - 6134109
Alignment:
Q  1 caagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattcaaactgtgcaatatgtaacccaatatccgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6134290 caagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattcaaactgtgcaatatgtaacccaatatccgca 6134191  T
Q  101 acaacagaaattgtgaaatcattaatgcaactgcgaccgttatttttgtcagtaaaattaacttgtcttatagaattaataa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6134190 acaacagaaattgtgaaatcattaatgcaactgcgaccgttatttttgtcagtaaaattaacttgtcttatagaattaataa 6134109  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 2718762 - 2718830
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||||||||||| ||||| ||||||| |||||||||| ||||||| || |||||||||||||||    
T  2718762 aagttattatacattatatgataatataaataattttaataatatttgtgaaaggttgtgattaattca 2718830  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 2721835 - 2721899
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaa 66  Q
    ||||||||||||||||| ||||||||||||| |||||||||| |||| ||||| |||||||||||    
T  2721835 aagttattatacattatatgatagtataaataattttaataatatttatgcaaggttgtgattaa 2721899  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 6133907 - 6133868
Alignment:
Q  199 ccttattcattttattttgtaaattgggatatattcttgg 238  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  6133907 ccttattcattttattttgtaaattgggatatatttttgg 6133868  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 9771915 - 9771951
Alignment:
Q  34 attttaataagatttgtgcaatgttgtgattaattca 70  Q
    |||||||||| ||||||||||||||||||||||||||    
T  9771915 attttaataacatttgtgcaatgttgtgattaattca 9771951  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 42237637 - 42237569
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||    
T  42237637 aagttattatacattgtttgataatataaataattttaataagatttgtgcaatgttgtggttaattca 42237569  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 11445479 - 11445546
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||||||||||| |||||| |||||||| |||||||| ||| ||| | ||||||||||||||||    
T  11445479 aagttattatacattatatgatagaataaatga-tttaataatattcgtggattgttgtgattaattca 11445546  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 12352581 - 12352529
Alignment:
Q  13 cattatttgatagtataaatgattttaataagatttgtgcaatgttgtgatta 65  Q
    |||||| ||||||| ||||| | ||||||||||||||||||||||||||||||    
T  12352581 cattatatgatagtgtaaataagtttaataagatttgtgcaatgttgtgatta 12352529  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 44705191 - 44705225
Alignment:
Q  36 tttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||||||||||||||||||||||| |||||    
T  44705191 tttaataagatttgtgcaatgttgtgattcattca 44705225  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 4848645 - 4848699
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatg 56  Q
    ||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  4848645 aagttattatacattatatgatagtataaataattttaataatatttgtgcaatg 4848699  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 5199060 - 5198998
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgatt 64  Q
    ||||||||||||||||| ||||| ||||||| |||||||||| |||||||||||||| |||||    
T  5199060 aagttattatacattatatgataatataaataattttaataatatttgtgcaatgttatgatt 5198998  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 16962266 - 16962333
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||| ||||||||||| |||||| |||||||| |||||||| ||||||||| ||| ||||||||||||    
T  16962266 aagtttttatacattatatgatagaataaatga-tttaataatatttgtgcattgtcgtgattaattca 16962333  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 21315642 - 21315575
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||||||| ||| |||||| ||||||||||  ||||| ||||||||| ||||||||||||||||    
T  21315642 aagttattatacactatatgatagaataaatgatta-aataatatttgtgcattgttgtgattaattca 21315575  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 49583212 - 49583148
Alignment:
Q  6 tattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||| |||  |||||||||| | ||||| |||||| || |||||||||||||||||||||    
T  49583212 tattatacaatataagatagtataattaatttttataagacttatgcaatgttgtgattaattca 49583148  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 46824713 - 46824648
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaatt 68  Q
    ||||| ||||||| ||| |||||| ||||||||||  ||||| ||||||||| ||||||||||||||    
T  46824713 aagttcttatacactatatgatagaataaatgatta-aataatatttgtgcattgttgtgattaatt 46824648  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 29866154 - 29866183
Alignment:
Q  41 taagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||||||||||||||||||||||||    
T  29866154 taagatttgtgcaatgttgtgattaattca 29866183  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 6218221 - 6218288
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||| ||||||||||||||||    
T  6218221 aagttattatacactatatgatagaataaatgattt-aataatatttgtgcattgttgtgattaattca 6218288  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 24118401 - 24118451
Alignment:
Q  20 tgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||| ||||||    
T  24118401 tgatagtatgaataattttaataagatttgtacaatgttgtgatgaattca 24118451  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 2301336 - 2301382
Alignment:
Q  22 atagtataaatgattttaataagatttgtgcaatgttgtgattaatt 68  Q
    ||||||||||||||||||| ||||||||||| |||||  ||||||||    
T  2301336 atagtataaatgattttaacaagatttgtgctatgttacgattaatt 2301382  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 8560338 - 8560277
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgat 63  Q
    |||||||||||| |||| || || ||||||| ||||||||||||| |||||||  |||||||    
T  8560338 aagttattatactttatatgttaatataaataattttaataagatatgtgcaacattgtgat 8560277  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 37247608 - 37247675
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||||||| ||| |||||| ||||||||||| ||||| ||||||||| ||||||||||||||||    
T  37247608 aagttattatacactatatgatagaataaatgattt-aataatatttgtgcattgttgtgattaattca 37247675  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 23325392 - 23325342
Alignment:
Q  20 tgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||| ||||| ||||||||||||| |||||||| |||||||| |||||    
T  23325392 tgatagtgtaaataattttaataagatatgtgcaattttgtgattgattca 23325342  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 21253410 - 21253354
Alignment:
Q  9 tatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgatta 65  Q
    |||||||||| ||||||||||||| | |||||||| ||||| ||||| | |||||||    
T  21253410 tatacattatatgatagtataaataagtttaataaaatttgagcaatttcgtgatta 21253354  T

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Target: scaffold0526 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 3335 - 3402
Alignment:
Q  3 agttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||| |||||| ||||||||||||| |||| | ||  ||||||||||||||||||||||||||    
T  3335 agttattatgcattatctgatagtataaataatttaattataatttgtgcaatgttgtgattaattca 3402  T

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Target: scaffold0472 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 11877 - 11812
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||||||| | |||||||   ||||| |||||||||||||||||||||||||||| ||||||||    
T  11877 aagttattatacactgtttgata---taaataattttaataagatttgtgcaatgttgtggttaattca 11812  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 3424370 - 3424305
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaatt 68  Q
    ||||||||||||||||| ||||||||||||| ||||| |||| | ||||||| ||||||||||||||    
T  3424370 aagttattatacattatatgatagtataaataatttttataata-ttgtgcattgttgtgattaatt 3424305  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 27054496 - 27054431
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaatt 68  Q
    ||||||||||||||||| |||||| |||||||| |||||||| ||||||| | ||||||||||||||    
T  27054496 aagttattatacattatatgatagaataaatga-tttaataatatttgtggattgttgtgattaatt 27054431  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 7411400 - 7411339
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgat 63  Q
    |||||||||||||||||  ||||  |||||| |||||||||||||||||| |||||||||||    
T  7411400 aagttattatacattataagatatcataaataattttaataagatttgtgaaatgttgtgat 7411339  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 18076531 - 18076463
Alignment:
Q  2 aagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    ||||||||||||||||| ||| || | |||| ||||||||||||||||||| | ||| |||||| ||||    
T  18076531 aagttattatacattatatgacagcacaaataattttaataagatttgtgctacgttatgattagttca 18076463  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 26828570 - 26828626
Alignment:
Q  12 acattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaatt 68  Q
    ||||||| || |||||||||| | |||||||| ||||||||||||||||||||||||    
T  26828570 acattatatgttagtataaataagtttaataaaatttgtgcaatgttgtgattaatt 26828626  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 16422502 - 16422542
Alignment:
Q  15 ttatttgatagtataaatgattttaataagatttgtgcaat 55  Q
    |||| ||||||||||||| |||||||||||||| |||||||    
T  16422502 ttatatgatagtataaataattttaataagattcgtgcaat 16422542  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 24909027 - 24909074
Alignment:
Q  22 atagtataaatgattttaataagatttgtgcaatgttgtgattaattca 70  Q
    |||| ||||||||||| ||||| ||||||||| ||||||||||||||||    
T  24909027 atagaataaatgattt-aataatatttgtgcattgttgtgattaattca 24909074  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 32104254 - 32104206
Alignment:
Q  20 tgatagtataaatgattttaataagatttgtgcaatgttgtgattaatt 68  Q
    |||||| |||||| ||||||||||  ||||||| |||||||||||||||    
T  32104254 tgatagcataaataattttaataacgtttgtgccatgttgtgattaatt 32104206  T

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