View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18689_low_4 (Length: 593)
Name: NF18689_low_4
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_low_4 |
 | |
|
| [»] scaffold0572 (1 HSPs) |
| | |
|
| [»] scaffold0127 (1 HSPs) |
| | |
|
| [»] scaffold0620 (2 HSPs) |
| | |
|
| [»] scaffold0236 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0572 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 10 - 574
Target Start/End: Complemental strand, 6727 - 6163
Alignment:
| Q |
10 |
ataatactttaggatcaaactcagaaggtgaacgaaaatttgatagatcagaaaataatgatagcacaaaatctggttctgcactagatgctgttgaata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6727 |
ataatactttaggatcaaactcagaaggtgaacgaaaatttgatagatcagaaaataatgatagcacaaaatctggttctgcactagatgctgttgaata |
6628 |
T |
|
| Q |
110 |
tgacaatctatgggagaaaatcacaatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgtgc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6627 |
tgacaatctatgggagaaaatcacaatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgcgc |
6528 |
T |
|
| Q |
210 |
ccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagtttaaatgaacaaatggaaattctgggttctttgttta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6527 |
ccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagtttaaattaacaaatggaaattctgggttctttgttta |
6428 |
T |
|
| Q |
310 |
tatttatattcgtcagctttgaatatgcatttgttttggccggttaatgtgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttct |
409 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6427 |
tatttatattcgtcagcttagaatatgcatttgttttggccggttaatgtgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttct |
6328 |
T |
|
| Q |
410 |
agagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttttggcttgttatagtgtcttctcctacacattggggtc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6327 |
agagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttttggcttgttatagtgtcttctcctacacattggggtc |
6228 |
T |
|
| Q |
510 |
aatttgtggtggaatccggataagtgttggaataagtcaaatttgggtgtttaatagggctcata |
574 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6227 |
aattggtggtggaatccggataagtgttggaatgagtcaaatttgggtgtttaatagggctcata |
6163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 541; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 10 - 574
Target Start/End: Complemental strand, 20970877 - 20970313
Alignment:
| Q |
10 |
ataatactttaggatcaaactcagaaggtgaacgaaaatttgatagatcagaaaataatgatagcacaaaatctggttctgcactagatgctgttgaata |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20970877 |
ataatgctttaggatcaaactcagaaggtgaaccaaaatttgatagatcagaaaataatgatagcacaaaatctggttctgcactagatgctgttgaata |
20970778 |
T |
|
| Q |
110 |
tgacaatctatgggagaaaatcacaatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgtgc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20970777 |
tgacaatctatgggagaaaatcacaatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgtgc |
20970678 |
T |
|
| Q |
210 |
ccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagtttaaatgaacaaatggaaattctgggttctttgttta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20970677 |
ccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttctttgttagtttaaattaacaaatggaaattctgggttctttgttta |
20970578 |
T |
|
| Q |
310 |
tatttatattcgtcagctttgaatatgcatttgttttggccggttaatgtgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttct |
409 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20970577 |
tatttatattcgtcagcttagaatatgcatttgttttggccggttaatgtgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttct |
20970478 |
T |
|
| Q |
410 |
agagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttttggcttgttatagtgtcttctcctacacattggggtc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20970477 |
agagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttttggcttgttatagtgtcttctcctacacattggggtc |
20970378 |
T |
|
| Q |
510 |
aatttgtggtggaatccggataagtgttggaataagtcaaatttgggtgtttaatagggctcata |
574 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20970377 |
aattggtggtggaatccggataagtgttggaataagtcaaatttgggtgtttaatagggctcata |
20970313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 379 - 494
Target Start/End: Original strand, 34105391 - 34105505
Alignment:
| Q |
379 |
gagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttttggctt |
478 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| ||||| ||||||||| ||||||||||| || |||||||||||||||| || ||||||||| |
|
|
| T |
34105391 |
gagttgaagggtgccttagtgatttgtttctagagtttggtgggccgatcacttttgattcgagatcgggagtcagtttcttgactcaa-attttggctt |
34105489 |
T |
|
| Q |
479 |
gttatagtgtcttctc |
494 |
Q |
| |
|
||||| |||| ||||| |
|
|
| T |
34105490 |
gttatggtgtgttctc |
34105505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 359 - 500
Target Start/End: Original strand, 34090319 - 34090462
Alignment:
| Q |
359 |
tgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttct--agagtctggtgagccgatcacatttgattcgaggacgaaagtcagtt |
456 |
Q |
| |
|
|||| ||| |||||| ||| ||||||| ||||| || |||||||| ||| | ||||||||||| | |||||| ||||||||||| || |||||||| |
|
|
| T |
34090319 |
tgacttctgtggtggaccgagagttgaagggtgcctcagtgatttttttttttagagtctggtgggtcgatcaattttgattcgagatcgggagtcagtt |
34090418 |
T |
|
| Q |
457 |
tcttgacttaagtttttggcttgttatagtgtcttctcctacac |
500 |
Q |
| |
|
||| |||| || ||||||| ||||||| ||||||||||| |||| |
|
|
| T |
34090419 |
tctagactcaaatttttgggttgttatggtgtcttctccgacac |
34090462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 15683874 - 15683909
Alignment:
| Q |
152 |
gtatgaactttacatttctataagaattgtatatat |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
15683874 |
gtatgaactttacatttctataagaattgtatatat |
15683909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 34092792 - 34092836
Alignment:
| Q |
398 |
tgatttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
|||||||| | | |||||||||||||||||||| ||||||||||| |
|
|
| T |
34092792 |
tgatttgtctttggagtctggtgagccgatcacttttgattcgag |
34092836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 10 - 490
Target Start/End: Original strand, 30865 - 31345
Alignment:
| Q |
10 |
ataatactttaggatcaaactcagaaggtgaacgaaaatttgatagatcagaaaataatgatagcacaaaatctggttctgcactagatgctgttgaata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30865 |
ataatactttaggatcaaactcagaaggtgaacgaaaatttgatagatcagaaaataatgatagcacaaaatctggttctgcactagatgctgttgaata |
30964 |
T |
|
| Q |
110 |
tgacaatctatgggagaaaatcacaatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgtgc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30965 |
tgacaatctatgggagaaaatcacaatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgcgc |
31064 |
T |
|
| Q |
210 |
ccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagtttaaatgaacaaatggaaattctgggttctttgttta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31065 |
ccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagtttaaattaacaaatggaaattctgggttctttgttta |
31164 |
T |
|
| Q |
310 |
tatttatattcgtcagctttgaatatgcatttgttttggccggttaatgtgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttct |
409 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31165 |
tatttatattcgtcagcttagaatatgcatttgttttggccggttaatgtgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttct |
31264 |
T |
|
| Q |
410 |
agagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttttggcttgttatagtgtct |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31265 |
agagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttttggcttgttatagtgtct |
31345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 10 - 464
Target Start/End: Complemental strand, 41403470 - 41403016
Alignment:
| Q |
10 |
ataatactttaggatcaaactcagaaggtgaacgaaaatttgatagatcagaaaataatgatagcacaaaatctggttctgcactagatgctgttgaata |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41403470 |
ataatactttaggatcaaactcagaaggtgaacgaaaatttgatagatcagaaaataatgatagcacaaaatctggttctgcactagatgctgttgaata |
41403371 |
T |
|
| Q |
110 |
tgacaatctatgggagaaaatcacaatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgtgc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41403370 |
tgacaatctatgggagaaaatcacaatggataaattggacttgtatgaactttacatttctataagaattgtatatattataagtggtgttttattgcgc |
41403271 |
T |
|
| Q |
210 |
ccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagtttaaatgaacaaatggaaattctgggttctttgttta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41403270 |
ccttatgttagttgttgctttaacagggtcctgtttgttcttttatcaattttcttagttagtttaaattaacaaatggaaattctgggttctttgttta |
41403171 |
T |
|
| Q |
310 |
tatttatattcgtcagctttgaatatgcatttgttttggccggttaatgtgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttct |
409 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41403170 |
tatttatattcgtcagcttagaatatgcatttgttttggccggttaatgtgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttct |
41403071 |
T |
|
| Q |
410 |
agagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgact |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41403070 |
agagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgact |
41403016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 373 - 473
Target Start/End: Complemental strand, 15841021 - 15840921
Alignment:
| Q |
373 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttt |
472 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||||||||| || |||||| ||||||||||| || |||||||||||||| | ||||||| |
|
|
| T |
15841021 |
gtccgggagatgaggggttccttagggatttgtttctagagtctggtgggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagtttt |
15840922 |
T |
|
| Q |
473 |
t |
473 |
Q |
| |
|
| |
|
|
| T |
15840921 |
t |
15840921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 411 - 495
Target Start/End: Complemental strand, 33034717 - 33034631
Alignment:
| Q |
411 |
gagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttc-ttgacttaagttttt-ggcttgttatagtgtcttctcc |
495 |
Q |
| |
|
|||||||||| | ||||||| | ||||||||| |||||||||||||| ||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
33034717 |
gagtctggtgggtcgatcacttctgattcgagatcgaaagtcagtttctttgacttaagtttttgggtttgttatggtgtcttctcc |
33034631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 475
Target Start/End: Complemental strand, 32876734 - 32876633
Alignment:
| Q |
373 |
gtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttt |
472 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| | |||| ||||| | ||| || ||||||||||| || ||||| ||||||||| ||| |||| |
|
|
| T |
32876734 |
gtccggga-ttgaggggtgccttagtgatttgtttatggagtatggtgggtcgacgacttttgattcgagatcgggagtcactttcttgacctaaatttt |
32876636 |
T |
|
| Q |
473 |
tgg |
475 |
Q |
| |
|
||| |
|
|
| T |
32876635 |
tgg |
32876633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 494
Target Start/End: Complemental strand, 36132837 - 36132719
Alignment:
| Q |
377 |
gggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttttgg- |
475 |
Q |
| |
|
||||||| ||||||| |||||||| || ||| | |||| ||||| | ||||| | ||||||| ||| || ||||||||||||||| | |||| ||||| |
|
|
| T |
36132837 |
gggagttaaggggtgtcttagtgaattatttttggagtttggtgggtcgatcgcttttgatttgagatcggaagtcagtttcttgattcaagtctttgga |
36132738 |
T |
|
| Q |
476 |
cttgttatagtgtcttctc |
494 |
Q |
| |
|
|||||||| |||| ||||| |
|
|
| T |
36132737 |
cttgttatggtgtgttctc |
36132719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 7857650 - 7857694
Alignment:
| Q |
398 |
tgatttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
7857650 |
tgatttggttctaaagtctggtgggccgatcacttttgattcgag |
7857694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 46814551 - 46814507
Alignment:
| Q |
398 |
tgatttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
46814551 |
tgatttggttctaaagtctggtgggccgatcacttttgattcgag |
46814507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 359 - 500
Target Start/End: Original strand, 3788 - 3929
Alignment:
| Q |
359 |
tgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttc |
458 |
Q |
| |
|
|||| ||| |||||| ||| ||||||| |||| || |||||||||||| |||||||||||| |||||||| ||||||||||| || |||||||||| |
|
|
| T |
3788 |
tgacttctgtggtggaccgagagttgaacggtgcctcagtgatttgtttttagagtctggtgggccgatcaattttgattcgagatcgggagtcagtttc |
3887 |
T |
|
| Q |
459 |
ttgacttaagtttttggcttgttatagtgtcttctcctacac |
500 |
Q |
| |
|
|||||| || ||||||| ||||||| ||||||||||| |||| |
|
|
| T |
3888 |
ttgactcaaatttttgggttgttatggtgtcttctccgacac |
3929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 8126 - 8170
Alignment:
| Q |
398 |
tgatttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
|||||||| | | |||||||||||||||||||| ||||||||||| |
|
|
| T |
8126 |
tgatttgtctttggagtctggtgagccgatcacttttgattcgag |
8170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 377 - 495
Target Start/End: Original strand, 12883566 - 12883684
Alignment:
| Q |
377 |
gggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagttttt-gg |
475 |
Q |
| |
|
||||||||||||||| |||| | |||||||| | |||||||||| |||||| | ||||||||||| ||||||||||| || |||||||||||||| || |
|
|
| T |
12883566 |
gggagttgaggggtgccttaataatttgtttatggagtctggtggaccgatcgc-tttgattcgagatcgaaagtcagtgtcgtgacttaagtttttggg |
12883664 |
T |
|
| Q |
476 |
cttgttatagtgtcttctcc |
495 |
Q |
| |
|
||||||| ||||| ||||| |
|
|
| T |
12883665 |
tttgttatggtgtcatctcc |
12883684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 495
Target Start/End: Complemental strand, 16055302 - 16055186
Alignment:
| Q |
380 |
agttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagttttt-ggctt |
478 |
Q |
| |
|
|||||| ||||| || ||||||| |||||||||||||||| |||||| | ||||||||||| ||||||||||||| ||| || ||||| ||||| |
|
|
| T |
16055302 |
agttgaagggtgcctcggtgatttttttctagagtctggtgggccgataaattttgattcgagataagaagtcagtttcttaactcaattttttaggctt |
16055203 |
T |
|
| Q |
479 |
gttatagtgtcttctcc |
495 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
16055202 |
gttacagtatcttctcc |
16055186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 381 - 483
Target Start/End: Complemental strand, 28765703 - 28765600
Alignment:
| Q |
381 |
gttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagttttt-ggcttg |
479 |
Q |
| |
|
||||||||||| | || |||||| |||||||| ||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
28765703 |
gttgaggggtgccctaatgatttttttctagattctggtggattgatcacttttgattcgagatcgagagtcagtttcttgacttaagtttttgggcttg |
28765604 |
T |
|
| Q |
480 |
ttat |
483 |
Q |
| |
|
|||| |
|
|
| T |
28765603 |
ttat |
28765600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 12046222 - 12046296
Alignment:
| Q |
368 |
tggtggtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
||||||||| |||||| ||||||| | |||||||||| ||| ||| ||||| ||||||||| ||||||||||| |
|
|
| T |
12046222 |
tggtggtccaggagttaaggggtgccatagtgatttgattcggaagtttggtgggccgatcacttttgattcgag |
12046296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 353 - 490
Target Start/End: Original strand, 2165460 - 2165597
Alignment:
| Q |
353 |
ttaatgtgacatctttggtggtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtc |
452 |
Q |
| |
|
||||| |||| ||| |||||||| | |||||||| | || ||| |||||||||||||||||| ||||| ||||||| | ||||||| ||| || |||| |
|
|
| T |
2165460 |
ttaatatgacttctctggtggtctgagagttgagtgatgccttggtgatttgtttctagagtttggtg-gccgatcgcttttgatttgagatcgggagtc |
2165558 |
T |
|
| Q |
453 |
agtttcttgacttaag-tttttggcttgttatagtgtct |
490 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||||| ||||| |
|
|
| T |
2165559 |
agtttcttgactcaagcttttttgcttgttatattgtct |
2165597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 473
Target Start/End: Complemental strand, 2792334 - 2792283
Alignment:
| Q |
422 |
gccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagttttt |
473 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
2792334 |
gccgatcacttttgattcgagatcggaagtcagtttcttgactcaagttttt |
2792283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 461
Target Start/End: Original strand, 26474830 - 26474896
Alignment:
| Q |
395 |
tagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttg |
461 |
Q |
| |
|
||||||||||||| | |||| ||||| ||||||||| ||||||||||| ||| ||| ||||||||| |
|
|
| T |
26474830 |
tagtgatttgtttttggagtttggtgggccgatcacttttgattcgagatcgagagttagtttcttg |
26474896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 31050760 - 31050702
Alignment:
| Q |
384 |
gaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
|||||||| | || ||||||| ||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
31050760 |
gaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgag |
31050702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 475
Target Start/End: Complemental strand, 39041363 - 39041281
Alignment:
| Q |
393 |
cttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagtttttgg |
475 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||| ||||||||||| | ||||||||||| |||| ||||| |||| |
|
|
| T |
39041363 |
cttaatgatttgtttacagagtctggtgggccgatcacttttgattcgagatcaggagtcagtttctagactcaagttgttgg |
39041281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 456
Target Start/End: Original strand, 49747524 - 49747582
Alignment:
| Q |
398 |
tgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtt |
456 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||||||| ||| ||| |||||||| |
|
|
| T |
49747524 |
tgatttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagtcagtt |
49747582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 473
Target Start/End: Original strand, 8520377 - 8520474
Alignment:
| Q |
376 |
cgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagttttt |
473 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||||| | ||||| | ||||||||| |||||||| |
|
|
| T |
8520377 |
cgggagctgaggggtgccttagtgatttgtttctagagtctgatggaccaatcacttttgattcgagatcagaagtctgcttcttgactaaagttttt |
8520474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 473
Target Start/End: Original strand, 37830980 - 37831075
Alignment:
| Q |
378 |
ggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagttttt |
473 |
Q |
| |
|
||||||||||| | | |||||||||||||||| |||| ||| |||||||||| |||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
37830980 |
ggagttgagggacgccctagtgatttgtttctaaagtcaggtaagccgatcacttttgattcgaaatctgaagtcagtttcttgactcaagttttt |
37831075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 380 - 457
Target Start/End: Complemental strand, 34143155 - 34143078
Alignment:
| Q |
380 |
agttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagttt |
457 |
Q |
| |
|
|||||||||||| |||||||||| ||| | |||||||||||||||||||| |||| ||| || || |||||||||| |
|
|
| T |
34143155 |
agttgaggggtgttttagtgatttttttttggagtctggtgagccgatcacttttgcttctagatcggaagtcagttt |
34143078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 4162133 - 4162060
Alignment:
| Q |
368 |
tggtggtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
||||||| || ||||||||||||| || |||||||||| | |||||||||| ||||||||| ||||||||||| |
|
|
| T |
4162133 |
tggtggttcgagagttgaggggtgcct-agtgatttgtgttgggagtctggtgggccgatcacttttgattcgag |
4162060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 19948047 - 19948010
Alignment:
| Q |
380 |
agttgaggggtgacttagtgatttgtttctagagtctg |
417 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
19948047 |
agttgaggggtgccttagtgatttgtttctggagtctg |
19948010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 14405195 - 14405239
Alignment:
| Q |
398 |
tgatttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
14405195 |
tgatttggttctaaagtctggtgggccgatcacttttgattcgag |
14405239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 441
Target Start/End: Complemental strand, 24099424 - 24099368
Alignment:
| Q |
385 |
aggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcga |
441 |
Q |
| |
|
||||||| |||| |||||||||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
24099424 |
aggggtgccttaatgatttgtttatagagtctggtgggccgatcacttttgattcga |
24099368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 405 - 495
Target Start/End: Complemental strand, 19295942 - 19295851
Alignment:
| Q |
405 |
tttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtttcttgacttaagttttt-ggcttgttatagtgtcttctcc |
495 |
Q |
| |
|
||||| |||||||||| ||| ||||| |||||||||| || |||| |||||||||||| |||||||| |||||||| | ||||||||||| |
|
|
| T |
19295942 |
tttcttgagtctggtgggcctatcacttttgattcgatatcggaagttagtttcttgactcaagtttttgggcttgttttggtgtcttctcc |
19295851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 398 - 495
Target Start/End: Original strand, 30127259 - 30127359
Alignment:
| Q |
398 |
tgatttgtttctagagtctggtgagccgatcacatttgattcgaggacgaaagtcagtt-tcttgacttaagttttt--ggcttgttatagtgtcttctc |
494 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||||||||||| || |||||||| |||||||| |||||||| |||||||| | || ||||||| |
|
|
| T |
30127259 |
tgatttgtttcgggagtctggtgagccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagttttttaggcttgttttggtctcttctc |
30127358 |
T |
|
| Q |
495 |
c |
495 |
Q |
| |
|
| |
|
|
| T |
30127359 |
c |
30127359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 438
Target Start/End: Complemental strand, 2782172 - 2782113
Alignment:
| Q |
379 |
gagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgatt |
438 |
Q |
| |
|
||||||||||||| |||| |||||||| || ||||||||||| | ||||||| ||||||| |
|
|
| T |
2782172 |
gagttgaggggtgccttaatgatttgtgtcgagagtctggtgggacgatcacttttgatt |
2782113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 442
Target Start/End: Complemental strand, 34475836 - 34475794
Alignment:
| Q |
400 |
atttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
34475836 |
atttgtttctatagtctggtgggccgatcacttttgattcgag |
34475794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 494
Target Start/End: Complemental strand, 10451 - 10388
Alignment:
| Q |
432 |
tttgattcgaggacgaaagtcagtttcttgacttaagtt-tttggcttgttatagtgtcttctc |
494 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| ||||| ||||||||||| | |||||||||| |
|
|
| T |
10451 |
tttgattcgagatcgagagtcagtttcttgactcaagttgtttggcttgttttggtgtcttctc |
10388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 27993650 - 27993576
Alignment:
| Q |
368 |
tggtggtccgggagttgaggggtgacttagtgatttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
||||||| || ||||||||||||| ||| |||||||| || |||||||||| |||||||| ||||||||||| |
|
|
| T |
27993650 |
tggtggttcgtgagttgaggggtgtctttatgatttgtgtcgggagtctggtggaccgatcacttttgattcgag |
27993576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 442
Target Start/End: Original strand, 6584906 - 6584950
Alignment:
| Q |
398 |
tgatttgtttctagagtctggtgagccgatcacatttgattcgag |
442 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
6584906 |
tgatttggttctaaagtctggtgggccgatcacttttgattcgag |
6584950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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