View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_low_5 (Length: 500)
Name: NF18689_low_5
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 6134893 - 6134732
Alignment:
| Q |
18 |
agtctccattccctctctgaatagttagtgtatgcagaaaagtgatttttgtgtattatttattagttctaattttggagaattgataattaatgttaat |
117 |
Q |
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| T |
6134893 |
agtctccattccctctctgaatagttagtgtatgcagaaaagtgatttttgtgtattatttattaattctaattttggagaattgataattaatgttaat |
6134794 |
T |
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| Q |
118 |
gtaacgagtctaatatcaaatgatattgaaaagcaacacttccagactgagttggaaggatc |
179 |
Q |
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| T |
6134793 |
gtaacgagtctaatatcaaatgatattgaaaagcaacacttccagactgagttggaaggatc |
6134732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 262 - 391
Target Start/End: Complemental strand, 6134649 - 6134520
Alignment:
| Q |
262 |
tttcaattacatcacacttttcacacatttcccaagttcccttttcctcacttatacccttcttaatttccatgtgcttcctttttccatttcattatgt |
361 |
Q |
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| T |
6134649 |
tttcaattacatcacacttttcacacatttcccaagttcccttttcctcacttatacccttcttaatttccatgtgcttcctttttccatttcattatat |
6134550 |
T |
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| Q |
362 |
aaccaatttttgagttgaggacttgacttg |
391 |
Q |
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| T |
6134549 |
aaccaatttttgagttgaggacttgacttg |
6134520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 424 - 500
Target Start/End: Complemental strand, 6134487 - 6134411
Alignment:
| Q |
424 |
aaaatagccggttacggctgaaacggccgcgacaaaaagatattggtagtgttctacactgtttttatctatttcag |
500 |
Q |
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| T |
6134487 |
aaaatagccggttacggcagaaacggccgcgacaaaaagatattggtagtgttctacactgtttttatttgtttcag |
6134411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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