View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18689_low_9 (Length: 426)
Name: NF18689_low_9
Description: NF18689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18689_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 385
Target Start/End: Original strand, 31438728 - 31439104
Alignment:
| Q |
9 |
gagatgaagtggagttgagtcctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtgga |
108 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31438728 |
gagaagaagtggagttgagtcctatgttgacagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtgga |
31438827 |
T |
|
| Q |
109 |
gtctgatgttgctgttgttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgttt |
208 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31438828 |
gtctgatgctgctactgttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgttt |
31438927 |
T |
|
| Q |
209 |
gaggatattaaggttactgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtgggga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31438928 |
gaggatattaaggttactgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtgggga |
31439027 |
T |
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| Q |
309 |
ctgtcccataccaaatttctcacttgttatgtaatgtcagtgtttctgctgttatctaattaaagtgtttgatcttc |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |
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| T |
31439028 |
ctgtcccataccaaatttctcacttgttatgtaatgtcagtgcttctgctgttatctaatgaaagtatttgatcttc |
31439104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 9 - 380
Target Start/End: Original strand, 31196902 - 31197270
Alignment:
| Q |
9 |
gagatgaagtggagttgagtcctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtgga |
108 |
Q |
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| T |
31196902 |
gagaagaagtggagttgagtcttatgttggcaaaggcacttggtttgagatggtgtctcttagttgcaaaagacttgcctttaaacaaggtggtggtgga |
31197001 |
T |
|
| Q |
109 |
gtctgatgttgctgttgttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgttctattttagatttgttt |
208 |
Q |
| |
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||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |
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| T |
31197002 |
gtccgatgatgctactgttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaaga---ttgctctattttaaatttgttt |
31197098 |
T |
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| Q |
209 |
gaggatattaaggttactgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtgggga |
308 |
Q |
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|||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
31197099 |
gaggatattattgttactgctattagtagaaatcaaaactctgatgctcgagagttagttcaaatgtccacagtagttggctctaaaaattgggtggtca |
31197198 |
T |
|
| Q |
309 |
ctgtcccataccaaatttctcacttgttatgtaatgtcagtgtttctgctgttatctaattaaagtgtttga |
380 |
Q |
| |
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|| ||||| ||||||||||||||||| | ||||||| ||||||| ||||||||||||| |||| ||||| |
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| T |
31197199 |
ctttcccacaccaaatttctcacttgctctgtaatgattctgtttctactgttatctaatttaagtatttga |
31197270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 29250221 - 29250045
Alignment:
| Q |
9 |
gagatgaagtggagttgagtcctatgttggcagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaataaggtggtggtgga |
108 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| | ||||| |||||||||||||| |
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| T |
29250221 |
gagaagaagtggatttgagtcctatgttggcggaggcacttggtttgagatggtgtctctcagttgcaaaatatttgtgtttaaacaaggtggtggtgga |
29250122 |
T |
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| Q |
109 |
gtctgatgttgctgttgttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagatt |
185 |
Q |
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|| ||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29250121 |
gttcaatgcagctgctgttgtggattgtatcaatgtcaaggctataatggctgcagttgatccaattatccaagatt |
29250045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 250 - 329
Target Start/End: Complemental strand, 29250041 - 29249962
Alignment:
| Q |
250 |
tgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaatttctc |
329 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
29250041 |
tgttgctcatgagttagttcaaatgtccaacatagttggctctaaaaattgggtggggaatgtcccacaccaaatttctc |
29249962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 163 - 330
Target Start/End: Original strand, 28767765 - 28767935
Alignment:
| Q |
163 |
aattgatccaattatccaagattgt---tgttctattttagatttgtttgaggatattaaggttactgctattagtagaaatcaaaactttgttgctcat |
259 |
Q |
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|||| |||||||||||||||||||| |||||||||||| ||||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||| || |
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| T |
28767765 |
aattaatccaattatccaagattgttgttgttctattttaattttgtttgaagatatgaagattactactattagtagaaatcaaaactttgttgctgat |
28767864 |
T |
|
| Q |
260 |
gagttagttcaaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaatttctca |
330 |
Q |
| |
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||||||||||||||| ||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| |
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| T |
28767865 |
gagttagttcaaatgcccaaaatagttggcacaaaaaattgggtggggaaagttccacaccaaatttctca |
28767935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 28768230 - 28768310
Alignment:
| Q |
206 |
tttgaggatattaaggttactgctattagtagaaatcaaaactttgttgctcatgagttagttcaaatgtccaaagtagtt |
286 |
Q |
| |
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||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
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| T |
28768230 |
tttgaggatatgaagattactcatattagtagaaatcaaaactttgttgctcatgggttagttcaaatgtctaaaatagtt |
28768310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 28768137 - 28768202
Alignment:
| Q |
126 |
ttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgtt |
191 |
Q |
| |
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|||||| ||||||||||||||| ||| |||| || |||| |||||||||||||||||||||||| |
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| T |
28768137 |
ttgtggtttgtatcaatggcaaatctacgatggatgtaatttatccaattatccaagattgttgtt |
28768202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 28768423 - 28768483
Alignment:
| Q |
270 |
aaatgtccaaagtagttggctctaaaaattgggtggggactgtcccataccaaatttctca |
330 |
Q |
| |
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||||||||||| || |||| | |||||||||||||||| |||||| ||||||||||||| |
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| T |
28768423 |
aaatgtccaaaataattggttgaaaaaattgggtggggaaagtcccacaccaaatttctca |
28768483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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