View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18690_high_1 (Length: 840)

Name: NF18690_high_1
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18690_high_1
NF18690_high_1
[»] chr7 (1 HSPs)
chr7 (9-822)||(2730511-2731324)


Alignment Details
Target: chr7 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 9 - 822
Target Start/End: Complemental strand, 2731324 - 2730511
Alignment:
Q  9 gagaagcaaaggggaaaaggggtccatatgggttttttaaaaggcgagaaatgcacacccgacaaggaggaaagggtatgtgcataatcttgatcaggtt 108  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  2731324 gagaaacaaaggagaaaaggggcccatatgggttttttaaaaggcgagaaatgcacacccgacaaggaggaaaggttatgtgaataatcttgatcaggtt 2731225  T
Q  109 accatccccttcttcttcagtaacttctaggatgaggtaaaaatgataagagttatggaaactttttgctaaatatgggaggtggggaaagtctatatta 208  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2731224 accatccccttcttcttcactaacttttaagatgaggtaaaaatgataagagttatggaaactttttgctaaatatgggaggtggggaaagtctatattc 2731125  T
Q  209 ctcaaaagagggatcaatgagggagaaaatatgactttgtgatgtttaaggaggtgaacaatgaagaggagcttgaaaagaggctgggggatgtttggtt 308  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2731124 ctcaaaagagggatcaatgagggagaaaatatgattttgtgatgtttaaggaggtgaacaatgaagaggagcttgaaaagaggctgggggatgtttggtt 2731025  T
Q  309 cgatgggaggaagccgaagatcaatagggcacgttttgaaagggttgagaaagtgcaaattatgaggaatcctgtagagaaaagatgtgttggcacatct 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  2731024 cgatgggaggaagccgaagatcaatagggcacgttttgaaagggttgagaaactgcaaattatgagcaatcctgtggagaaaagatgtgttggtacatct 2730925  T
Q  409 gcaaatgttgagtttcagatggtggggaatttattttcggtgatggaagttacagtttgtgagagtgcgttggaggatctagataactcttatgtgaaca 508  Q
    ||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  2730924 gcaaatgttgagtttcagacggtcgggaagttattttcgatgatggaagttatggtttgtgagagtgtgttggaggatctagagaactcttatgtgaaca 2730825  T
Q  509 aaagattgtgggagtcaaatttgaaggatatcagaaaatggtctcgagagagagtggcaaggaggagaagagtatggcttcaagtgtttggaatccccct 608  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2730824 aaagattgtgggagtcaaatttcaaggatatcataaaatggtctcgagagaaagtggcaaggaggagaagagtatggcttcaagtgtttggaatccccct 2730725  T
Q  609 tcatgcatgagaggaagggttcttcaagcttcttgattcaaagttcagtgaattcatagattttacggtgatacaattcaaaggaaccatctagatgtgg 708  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2730724 tcatgcatgagaggaagggttcttcaaccttcttgattcaaagttcagagaattcatagattttacagtgatacaattcaaaggaaccatctagatgtgg 2730625  T
Q  709 catagatcctagtgtttttctcttaaaacggggttgataggtggatctttcaccatttcaattgtaggtaaaaggtacaagatatgggtgaaggaagaag 808  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2730624 catagatcctagtgtttttctcttaaaatggggttaataggtggatctttcaccatttcaattgtaggtataaggtacaagatatgggtgaaggaagaag 2730525  T
Q  809 atttacggtggatg 822  Q
    ||||||||||||||    
T  2730524 atttacggtggatg 2730511  T

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