View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_high_12 (Length: 388)
Name: NF18690_high_12
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 35594599 - 35594774
Alignment:
| Q |
10 |
aagaaaatctaaattaacgattataattactaattctctattctttcttcgattttgaccaaaaagcaaaacagagttgaaaacagagcataatcactaa |
109 |
Q |
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| T |
35594599 |
aagaaaatctaaattaacgattataattactaattctctattctttcttcgattttgaccaaaaagaaaaacagagttgaaaacagagcataatcactaa |
35594698 |
T |
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| Q |
110 |
tactagaaagtagaaacacatagtgataattgatcattaagaaataattaagcataatgaatgaataatcgattat |
185 |
Q |
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| T |
35594699 |
tactagaaagtagaaacacatagtgataattgatcattaagaaataattaagcataatgaatgaataatcgattat |
35594774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 239 - 372
Target Start/End: Original strand, 35594828 - 35594961
Alignment:
| Q |
239 |
cgatgctaacaaactgttcttcagaagaaacagagtttgatttggagaattgaccgtcggcagaggtcaactccgacgggcgtgaaaatgagcggagttt |
338 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
35594828 |
cgatgctaacaaactgttcttcagaagaaacagagtttgatttggagaattgaccgtcgccagaggtaaactccgacgggcgtgaaaatgagcggagttt |
35594927 |
T |
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| Q |
339 |
gaccggaggaggtggaggaaccattggaaaaaag |
372 |
Q |
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| T |
35594928 |
gaccggaggaggtggaggaaccattggaaaaaag |
35594961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 31850362 - 31850287
Alignment:
| Q |
10 |
aagaaaatctaaattaacgattataattactaattctctattctttcttcgattttgaccaaaaagcaaaacagag |
85 |
Q |
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| T |
31850362 |
aagaaaatcttaattaacaatcttaattattaattctctattctttcttcgtttttgaccaaaaagcaaaatagag |
31850287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 32001083 - 32001031
Alignment:
| Q |
33 |
taattactaattctctattctttcttcgattttgaccaaaaagcaaaacagag |
85 |
Q |
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| T |
32001083 |
taattactaattctctattctttcttcatttttgaccaaaaagcaaaacagag |
32001031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 32000946 - 32000885
Alignment:
| Q |
123 |
aaacacatagtgataattgatcattaagaaataattaagcataatgaatgaataatcgattat |
185 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||| || ||||||||||||| |
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| T |
32000946 |
aaacacacagtgataattgatcattaagaagtaattaagcataat-cataaataatcgattat |
32000885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 32001006 - 32000965
Alignment:
| Q |
44 |
tctctattctttcttcgattttgaccaaaaagcaaaacagag |
85 |
Q |
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| T |
32001006 |
tctctattctttcttcgtttttgaccaaaaagcaaaacagag |
32000965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 31850192 - 31850141
Alignment:
| Q |
133 |
tgataattgatcattaagaaataattaagcataatgaatgaataatcgattat |
185 |
Q |
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| T |
31850192 |
tgataattgatcattaagaagtaattaagcataat-cataaataatcgattat |
31850141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 31850262 - 31850221
Alignment:
| Q |
44 |
tctctattctttcttcgattttgaccaaaaagcaaaacagag |
85 |
Q |
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|||||||| |||||||| |||||| ||||||||||||||||| |
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| T |
31850262 |
tctctattttttcttcgtttttgatcaaaaagcaaaacagag |
31850221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 34122025 - 34122098
Alignment:
| Q |
10 |
aagaaaatctaaattaacgattataattactaattctctattctttcttcgattttgaccaaaaagcaaaacag |
83 |
Q |
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|||||||||| |||||| || |||||| | |||||| |||||||||||| |||||||||||||||||||||| |
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| T |
34122025 |
aagaaaatcttgattaacaatcttaattattgattctcgattctttcttcgtttttgaccaaaaagcaaaacag |
34122098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 34122125 - 34122178
Alignment:
| Q |
131 |
agtgataattgatcattaagaaataattaagcataatgaatgaataatcgattat |
185 |
Q |
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| T |
34122125 |
agtgataattgatcactaagaaataattaagcattat-cataaataatcgattat |
34122178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 34122232 - 34122265
Alignment:
| Q |
239 |
cgatgctaacaaactgttcttcagaagaaacaga |
272 |
Q |
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| T |
34122232 |
cgatgctaacaaactgtttttcagaagaaacaga |
34122265 |
T |
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