View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_high_13 (Length: 382)
Name: NF18690_high_13
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 44749938 - 44750093
Alignment:
| Q |
1 |
agatctaccactgatattaagatgagattgttgttgtcatcttagacgcataaaataaaagaacaaactagtccttctatatataatacttgcagcatga |
100 |
Q |
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| T |
44749938 |
agatctaccactgatattaagatgagattgttgttgtcatcttagacgcataaaataaaagaactaactagcccttctatatataatacttgcagcatga |
44750037 |
T |
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| Q |
101 |
aaagagttgcacattccatgccacatctacgtaagcatgttaaagcgacaaaaaat |
156 |
Q |
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| T |
44750038 |
aaagagttgcacattccatgccacatctacgtaagcatgttaaagcgacaaaaaat |
44750093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 44750135 - 44750283
Alignment:
| Q |
187 |
cctaaatacgcaggtttggacttttgatccgaaacgacaataaacggtcacttgaggatccttaaggaaacagtagtaagtaaaacctaaagagcaannn |
286 |
Q |
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| T |
44750135 |
cctaaatacgcaggtttggacttttgatccgaaacgacaataaacggtcacttgaggatccttaaggaaacagt----agtaaaacctaaagagcaattt |
44750230 |
T |
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| Q |
287 |
nnnngtttcatgccccatttggcctcctatctataagagtagattattaagcatgag |
343 |
Q |
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| T |
44750231 |
ttttgtttcatgccccatttggcctc----ctataagagtagattattaagcatgag |
44750283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 24198685 - 24198589
Alignment:
| Q |
25 |
agattgttgttgtcatcttagacgcataaaataaaagaacaaactagtccttctatatataatacttgcagcatgaaaagagttgcacattccatgc |
121 |
Q |
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| T |
24198685 |
agattgttgttatcatcttagcagcataaaacaaaagaacaaactagcccttctatatacaatacttgcagaatgaaaagagttgcacgtttcatgc |
24198589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 50197448 - 50197403
Alignment:
| Q |
26 |
gattgttgttgtcatcttagacgcataaaataaaagaacaaactag |
71 |
Q |
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| T |
50197448 |
gattgttgttgtcatcatagttgcataaaacaaaagaacaaactag |
50197403 |
T |
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