View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18690_high_21 (Length: 238)
Name: NF18690_high_21
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_high_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 24188715 - 24188923
Alignment:
| Q |
18 |
tccacaaataaacccaaacctgttcttccttgtaaggtccgcgctacaatttcacttcttacaattttaacggacgcttcatgtcgagctaacggtaccg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||| |||| |
|
|
| T |
24188715 |
tccacaaataaacccaaacctgttcttccttggaaggtccgcgctacaatttcacttcttacagttttaacggactcttcatgtcgcgcaaacggcaccg |
24188814 |
T |
|
| Q |
118 |
tcaaccgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgttaactccgaaaa |
217 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
24188815 |
tcaatcgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccactaaagacgtcaccgttaactccgaaaa |
24188914 |
T |
|
| Q |
218 |
caacctttg |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
24188915 |
caacctttg |
24188923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 24178919 - 24179117
Alignment:
| Q |
28 |
aacccaaacctgttcttccttgtaaggtccgcgctacaatttcacttcttacaattttaacggacgcttcatgtcgagctaacggtaccgtcaaccgccg |
127 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24178919 |
aacccaaacctcttcttccttggaaggtccgcgctacaatttcacttcttacagttttaacggacgcttcatgtcgagctaacggtaccgtcaaccgccg |
24179018 |
T |
|
| Q |
128 |
tctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgttaactccgaaaacaacctttg |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
24179019 |
tctctttaacttcttcgatctcaaatcctcacctaacgccactcctgttaacggcgtttccaccaaagacgttaccgttaacgccgaaaataacgtttg |
24179117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 24168476 - 24168681
Alignment:
| Q |
21 |
acaaataaacccaaacctgttcttccttgtaaggtccgcgctacaatttcacttcttacaattttaacggacgcttcatgtcgagctaacggtaccgtca |
120 |
Q |
| |
|
||||| |||||||||||| ||||| |||| ||| |||||||| |||||||||||| || ||||||| ||||||| ||||| ||||||| || ||| |
|
|
| T |
24168476 |
acaaacaaacccaaacctcttctttcttggaagcctcgcgctaccatttcacttctttcatttttaaccgacgcttgttgtcgctctaacggcacattca |
24168575 |
T |
|
| Q |
121 |
accgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgttaactccgaaaacaa |
220 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||| ||||||| |||||| ||||||||||||||||||| || |
|
|
| T |
24168576 |
accgccgtctctttaacttcttcatccgcaaatcctcgcctaatgccactcccgttaacggtgtttccatcaaagacattaccgttaactccgaaaataa |
24168675 |
T |
|
| Q |
221 |
cctttg |
226 |
Q |
| |
|
| |||| |
|
|
| T |
24168676 |
cgtttg |
24168681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 24151676 - 24151842
Alignment:
| Q |
60 |
gctacaatttcacttcttacaattttaacggacgcttcatgtcgagctaacggtaccgtcaaccgccgtctctttaacttcttcgatctcaaatcctcac |
159 |
Q |
| |
|
||||| |||||||||||| || ||||| |||||||| | ||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
24151676 |
gctaccatttcacttctttcacttttattcgacgcttcttctcgctctaacggcaccgtcaaccgccgtctctttaacttcttcagtctcaatgcctcac |
24151775 |
T |
|
| Q |
160 |
ctaacgccactccgattaacggcgtttccacaaaagacgttaccgttaactccgaaaacaacctttg |
226 |
Q |
| |
|
||||| ||||||| |||||||||||||||| |||||| ||||||||||| ||||||| ||| |||| |
|
|
| T |
24151776 |
ctaactccactcccgttaacggcgtttccaccaaagacattaccgttaacaccgaaaataacgtttg |
24151842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 24112443 - 24112546
Alignment:
| Q |
106 |
ctaacggtaccgtcaaccgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggcgtttccacaaaagacgttaccgt |
205 |
Q |
| |
|
||||||| ||||| ||||||||| | |||| ||||| |||| |||||| || |||||||||| || |||||||||||||||| |||||||||| ||| |
|
|
| T |
24112443 |
ctaacggcaccgttaaccgccgttttcttaatttcttagatcgcaaatcttcccctaacgccatccctgttaacggcgtttccaccaaagacgttatcgt |
24112542 |
T |
|
| Q |
206 |
taac |
209 |
Q |
| |
|
|||| |
|
|
| T |
24112543 |
taac |
24112546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 24107298 - 24107412
Alignment:
| Q |
83 |
tttaacggacgcttcatgtcgagctaacggtaccgtcaaccgccgtctctttaacttcttcgatctcaaatcctcacctaacgccactccgattaacggc |
182 |
Q |
| |
|
||||||||||||| |||||||| |||| |||| || ||||||||||| | ||||| || ||| |||| | || |||| || ||||| |||||||| |
|
|
| T |
24107298 |
tttaacggacgctgcatgtcgatctaatggtagtgttaaccgccgtcttctcaactttttagataacaaaacatcggctaaagcaactcccattaacggt |
24107397 |
T |
|
| Q |
183 |
gtttccacaaaagac |
197 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
24107398 |
gtttccacaaaagac |
24107412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University