View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18690_high_3 (Length: 631)

Name: NF18690_high_3
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18690_high_3
NF18690_high_3
[»] chr2 (5 HSPs)
chr2 (253-514)||(17984051-17984316)
chr2 (1-97)||(17984657-17984753)
chr2 (407-491)||(17976547-17976631)
chr2 (1-97)||(17980863-17980958)
chr2 (541-579)||(17983900-17983938)
[»] chr5 (1 HSPs)
chr5 (25-97)||(29830777-29830849)
[»] chr1 (2 HSPs)
chr1 (1-94)||(15851305-15851397)
chr1 (1-94)||(25380714-25380809)
[»] chr8 (1 HSPs)
chr8 (217-254)||(26537969-26538006)
[»] chr7 (1 HSPs)
chr7 (217-253)||(5031921-5031957)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 253 - 514
Target Start/End: Complemental strand, 17984316 - 17984051
Alignment:
Q  253 aataaaatttatgacataaaataaataacttgaatggataaataaaagagattcaattcaaagaggagaatccacctta----cgtgccttgaaacttct 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    |||||||||||||||||    
T  17984316 aataaaatttatgacataaaataaataacttgaatggataaataaaagagattcagttcaaagaggagaattcaccttaagtacgtgccttgaaacttct 17984217  T
Q  349 tatcaatataacaaaagaaaatgaagttgcatatacctatcaatagccaagccatgcacatcttactttgcaatcaatttcgtctttgaaccagtttcat 448  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17984216 tatcaatataacaagagaaaatgaagttgcatatacctatcaatagccaagccatgcacatcttactttgcaatcaatttcgtctttgaaccagtttcat 17984117  T
Q  449 acacatatatgacccctccctcccttccaaagtttcagtacatccacatagtagagatatcatcaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17984116 acacatatatgacccctccctcccttccaaagtttcagtacatccacatagtagagatatcatcaa 17984051  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17984753 - 17984657
Alignment:
Q  1 aaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctcacac 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  17984753 aaaagtaataagactatgtaataataataagattcactaagaattggtagattcaaagtcaaatcttaatacaatccatgattgataattctcacac 17984657  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 407 - 491
Target Start/End: Complemental strand, 17976631 - 17976547
Alignment:
Q  407 catcttactttgcaatcaatttcgtctttgaaccagtttcatacacatatatgacccctccctcccttccaaagtttcagtacat 491  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17976631 catcttactttgcaatcaatttcttctttgaaccagtttcatacacatatatgacccctccctcccttccaaagtttgagtacat 17976547  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17980958 - 17980863
Alignment:
Q  1 aaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctcacac 97  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  17980958 aaaagtaataagactatgtaataata-taagattcactaagaattggtagattcaaagtcaaatcttaataaaatccatgattgataattctcacac 17980863  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 579
Target Start/End: Complemental strand, 17983938 - 17983900
Alignment:
Q  541 gcccgaaaaaagcttacaagaaatgtcataaactctttt 579  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17983938 gcccgaaaaaagcttacaagaaatgtcataaactctttt 17983900  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 29830777 - 29830849
Alignment:
Q  25 taataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctcacac 97  Q
    ||||||||||||||||||||||  | ||||||||||||||||||| |||||| |  |||||||||||||||||    
T  29830777 taataagattcactaagaattgagagattcaaagtcaaatcttaacacaatctattattgataattctcacac 29830849  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 15851305 - 15851397
Alignment:
Q  1 aaaagtaataagactatgtaataataataagattcactaagaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctca 94  Q
    |||||||||||||||||||| |||||||||||| || |||| ||||  | |||||| || ||||||||| |||||  | |||||||||||||||    
T  15851305 aaaagtaataagactatgtagtaataataagatccaataag-attgagagattcaatgtaaaatcttaacacaatttaagattgataattctca 15851397  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 25380809 - 25380714
Alignment:
Q  1 aaaagtaataagactatgtaataataataagattcacta--agaattggtacattcaaagtcaaatcttaatacaatccacgattgataattctca 94  Q
    |||||||||||||| ||| |||||||||||||||| |||  |||||||    |||||| ||||||| ||||| |||||    ||||||||||||||    
T  25380809 aaaagtaataagaccatgcaataataataagattcgctaggagaattgagtgattcaatgtcaaatattaatgcaatctgttattgataattctca 25380714  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 26538006 - 26537969
Alignment:
Q  217 tgacatatattacatggggtaaagcaccattatcccaa 254  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  26538006 tgacatatattacaaggggtaaagcaccattaacccaa 26537969  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 5031957 - 5031921
Alignment:
Q  217 tgacatatattacatggggtaaagcaccattatccca 253  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  5031957 tgacatatattacagggggtaaagcaccattaaccca 5031921  T

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