View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18690_low_10 (Length: 438)

Name: NF18690_low_10
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18690_low_10
NF18690_low_10
[»] chr2 (5 HSPs)
chr2 (20-434)||(42117689-42118099)
chr2 (250-326)||(28715937-28716013)
chr2 (252-347)||(31592976-31593071)
chr2 (247-354)||(5198716-5198825)
chr2 (247-354)||(15603024-15603133)
[»] chr7 (4 HSPs)
chr7 (247-417)||(16183692-16183868)
chr7 (247-404)||(8140025-8140185)
chr7 (294-404)||(8138569-8138681)
chr7 (247-325)||(30235198-30235278)
[»] chr4 (7 HSPs)
chr4 (247-417)||(10427360-10427536)
chr4 (247-329)||(30950244-30950327)
chr4 (247-354)||(24520086-24520195)
chr4 (247-354)||(42266050-42266159)
chr4 (247-354)||(42270769-42270878)
chr4 (247-354)||(48701882-48701991)
chr4 (257-305)||(21515529-21515577)
[»] chr1 (3 HSPs)
chr1 (247-430)||(4130152-4130340)
chr1 (263-417)||(46191311-46191470)
chr1 (259-352)||(30697188-30697282)
[»] chr6 (4 HSPs)
chr6 (247-354)||(21966698-21966805)
chr6 (247-354)||(1234848-1234957)
chr6 (311-384)||(23012626-23012699)
chr6 (247-354)||(27878770-27878879)
[»] chr3 (3 HSPs)
chr3 (247-298)||(54546088-54546139)
chr3 (349-417)||(24671187-24671256)
chr3 (247-354)||(5823336-5823445)
[»] chr5 (5 HSPs)
chr5 (247-354)||(34360103-34360212)
chr5 (247-354)||(29585361-29585470)
chr5 (247-354)||(34352395-34352504)
chr5 (247-354)||(41718557-41718666)
chr5 (247-354)||(41723283-41723392)
[»] chr8 (2 HSPs)
chr8 (247-354)||(9439433-9439542)
chr8 (247-354)||(9444153-9444262)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Complemental strand, 42118099 - 42117689
Alignment:
Q  20 ggatatgggggacactattcttgtttggaacgagtagtggtgaattgacgttgatgtgttaatttctttggatgacctacacccctctttggcttatttg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42118099 ggatatgggggacactattcttgtttggaacgagtagtggtgaattgacggtgatgtgttaatttctttggatgacctacacccctctttggcttatttg 42118000  T
Q  120 aaggttgcaaatttgtcacatacgtacagactccaaaaactagaatgttgagttgcatgttcatctttttggtgtgtttggttgggtactagaacataaa 219  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42117999 aaggttgcaaatttgtcaca----tacagactccaaaaactagaatgttgagttgcatgttcatctttttggtgtgtttggttgggtactagagcataaa 42117904  T
Q  220 tattatcatgaagctgagnnnnnnnntaactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataa 319  Q
    |||||| |||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  42117903 tattatgatgaagctgagaaaaaaaataactgaacatacaatatttacgtagaaacctctcaattaataaggggaaaaaccacgagacaaaagtagataa 42117804  T
Q  320 ctttcactaaacgagagaaattataagacctctctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaacctaggagaaacta 419  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  42117803 ctttcattaaacgagagaaattataagacctctctaaatatgagaaaagacaaattactctctctatggaaataggagtatactaacctaggagaaacta 42117704  T
Q  420 tatttcatctcactc 434  Q
    |||||||||||||||    
T  42117703 tatttcatctcactc 42117689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 326
Target Start/End: Complemental strand, 28716013 - 28715937
Alignment:
Q  250 tgaacatacaatatttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcac 326  Q
    |||||| ||||||||||||| |||||| |||| ||||||||||| |||||||| ||| || | |||| |||||||||    
T  28716013 tgaacacacaatatttacgtggaaacccctcattaaataaggggaaaaaccacaagagaagaatagagaactttcac 28715937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 347
Target Start/End: Original strand, 31592976 - 31593071
Alignment:
Q  252 aacatacaata-tttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcactaaacgagagaaattataaga 347  Q
    ||||||||||| ||||||| |||| |||||||||||||||    |||||||| |||||| |||||| |||||||||||| ||| |||||||| ||||    
T  31592976 aacatacaataatttacgtggaaatctctcaataaataagaaaaaaaaccac-agataagagtagagaactttcactaaccgaaagaaattacaaga 31593071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 5198716 - 5198825
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  5198716 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 5198815  T
Q  345 agacctctct 354  Q
     |||||||||    
T  5198816 ggacctctct 5198825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 15603133 - 15603024
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||     |||||||| |    
T  15603133 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtagaagaaattaca 15603034  T
Q  345 agacctctct 354  Q
    ||||||||||    
T  15603033 agacctctct 15603024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 417
Target Start/End: Original strand, 16183692 - 16183868
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagaga-aattat 343  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  ||| |||||     
T  16183692 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattac 16183791  T
Q  344 aagacctct--ctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 417  Q
    |||||||||  |||||||| || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  16183792 aagacctctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 16183868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 404
Target Start/End: Original strand, 8140025 - 8140185
Alignment:
Q  247 aactgaacatacaatatttacgtagaaacctctcaataaataagggg-gaaaaccacgagataaaagtagataactttcactaaacgagagaaattataa 345  Q
    ||||||||  |||||||||| || |||||| ||||| |||||||||| |||||||| | | ||| | |||| |||||||||| |  |  |||||||||||    
T  8140025 aactgaacgcacaatatttatgtggaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataa 8140124  T
Q  346 gacctctcta--aatacgagaaaagacaatttactctctctatggaaataggagaatacta 404  Q
    |||||||||   ||||| || | |||||| |||| |||||| | |||||||||||||||||    
T  8140125 gacctctctcttaatacaaggagagacaaattaccctctctcttgaaataggagaatacta 8140185  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 404
Target Start/End: Original strand, 8138569 - 8138681
Alignment:
Q  294 gaaaaccacgagataaaagtagataactttcactaaacgagagaaattataagacctc--tctaaatacgagaaaagacaatttactctctctatggaaa 391  Q
    ||||||||||||  || | |||| ||||||||||||| |  |||||||| ||||||||  ||||||||| || | |||||| ||||||||||| | |||     
T  8138569 gaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagagacaaattactctctctcttgaag 8138668  T
Q  392 taggagaatacta 404  Q
    |||||||||||||    
T  8138669 taggagaatacta 8138681  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 30235278 - 30235198
Alignment:
Q  247 aactgaacatacaatatttacgtagaaacctctcaataaataagggg--gaaaaccacgagataaaagtagataactttca 325  Q
    ||||||||| ||||||||||||| |||||| |||||  |||||||||   ||||||||| ||||| |||||| ||||||||    
T  30235278 aactgaacacacaatatttacgtggaaacccctcaacgaataaggggaaaaaaaccacgggataagagtagaaaactttca 30235198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 417
Target Start/End: Complemental strand, 10427536 - 10427360
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaacc-acgagataaaagtagataactttcactaaacgagaga-aattat 343  Q
    ||||||||| ||||||||| |||  |||||| ||||| |||||||||| |||| | ||| |  ||||||||||||||||||||||  |  ||| |||||     
T  10427536 aactgaacacacaatattttacgcggaaacccctcaacaaataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattac 10427437  T
Q  344 aagac--ctctctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 417  Q
    |||||  |||||||||||| || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  10427436 aagacttctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 10427360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 30950244 - 30950327
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcactaa 329  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||  ||||||||| |  || |||||| ||||||||||||    
T  30950244 aactgaacacacaatattttacgtggaaacccctcaacaaataagggaaaaaaccacggggcaagagtagagaactttcactaa 30950327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 24520086 - 24520195
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  24520086 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 24520185  T
Q  345 agacctctct 354  Q
     |||||||||    
T  24520186 ggacctctct 24520195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 42266159 - 42266050
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  42266159 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 42266060  T
Q  345 agacctctct 354  Q
     |||||||||    
T  42266059 ggacctctct 42266050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 42270878 - 42270769
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  42270878 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 42270779  T
Q  345 agacctctct 354  Q
     |||||||||    
T  42270778 ggacctctct 42270769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 48701882 - 48701991
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  48701882 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 48701981  T
Q  345 agacctctct 354  Q
     |||||||||    
T  48701982 ggacctctct 48701991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 21515529 - 21515577
Alignment:
Q  257 acaatatttacgtagaaacctctcaataaataagggggaaaaccacgag 305  Q
    ||||||||||| |||||| | |||||||||||||||  |||||||||||    
T  21515529 acaatatttacatagaaatccctcaataaataagggaaaaaaccacgag 21515577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 430
Target Start/End: Complemental strand, 4130340 - 4130152
Alignment:
Q  247 aactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagaga-aattata 344  Q
    ||||||||| |||| |||||||| |||| | ||||| |||||| ||| |||| ||||| |  || |||||| ||||||||||||  |  ||| ||||| |    
T  4130340 aactgaacacacaaaatttacgtggaaatccctcaacaaataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattaca 4130241  T
Q  345 agac--ctctctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaactatatttcatctc 430  Q
    ||||  |||||||||||| || | |||||| |||| |||||| | ||||||||| ||||||||| ||||||||||||||||||| ||||    
T  4130240 agacttctctctaaatacaaggagagacaaattaccctctctcttgaaataggacaatactaacactaggagaaactatatttcctctc 4130152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 417
Target Start/End: Complemental strand, 46191470 - 46191311
Alignment:
Q  263 tttacgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagaga-aattataagac--ctctctaaat 358  Q
    ||||||| |||||| ||||| |||||||||| |||| ||||| || || |||||| ||||||||||||  |  ||| ||||| |||||  ||||||||||    
T  46191470 tttacgtggaaacccctcaacaaataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaat 46191371  T
Q  359 acgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 417  Q
    |  || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  46191370 agaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 46191311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 352
Target Start/End: Original strand, 30697188 - 30697282
Alignment:
Q  259 aatatttacgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattataagacctct 352  Q
    ||||||||||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |||||||||    
T  30697188 aatatttacgtggaaacccctcaacaaataaggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctct 30697282  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 21966805 - 21966698
Alignment:
Q  247 aactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcactaaacgagagaaattataag 346  Q
    |||| |||||| |||||||| || |||||| |||||||||||| ||| |||| || | |  || |||||| ||||||||||||| |  ||||||||||||    
T  21966805 aactaaacataaaatatttatgtggaaacccctcaataaataaagggaaaaatcatggggcaagagtagagaactttcactaaatggaagaaattataag 21966706  T
Q  347 acctctct 354  Q
    ||||||||    
T  21966705 acctctct 21966698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 1234957 - 1234848
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  1234957 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 1234858  T
Q  345 agacctctct 354  Q
     |||||||||    
T  1234857 ggacctctct 1234848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 23012626 - 23012699
Alignment:
Q  311 agtagataactttcactaaacgagagaaattataagacctctctaaatacgagaaaagacaatttactctctct 384  Q
    |||||| ||||||||||||  ||||||||||  ||||||||| ||||||| |  | |||||| |||||||||||    
T  23012626 agtagagaactttcactaagtgagagaaatttcaagacctctttaaatacaatgagagacaaattactctctct 23012699  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 27878770 - 27878879
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  27878770 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 27878869  T
Q  345 agacctctct 354  Q
     |||||||||    
T  27878870 ggacctctct 27878879  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 54546139 - 54546088
Alignment:
Q  247 aactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaa 298  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||| ||||    
T  54546139 aactgaacatacaatatttacgtggaaacccctcaacaaataaggggaaaaa 54546088  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 417
Target Start/End: Original strand, 24671187 - 24671256
Alignment:
Q  349 ctctctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 417  Q
    |||||||||||| || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  24671187 ctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 24671256  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 5823336 - 5823445
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  5823336 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 5823435  T
Q  345 agacctctct 354  Q
     |||||||||    
T  5823436 ggacctctct 5823445  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 34360212 - 34360103
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggg-gaaaaccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| ||||||||||| ||||| ||||||||||  ||||||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  34360212 aactgaacacacaatattttacgtagaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 34360113  T
Q  345 agacctctct 354  Q
     |||||||||    
T  34360112 ggacctctct 34360103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 29585361 - 29585470
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  29585361 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 29585460  T
Q  345 agacctctct 354  Q
     |||||||||    
T  29585461 ggacctctct 29585470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 34352504 - 34352395
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  34352504 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 34352405  T
Q  345 agacctctct 354  Q
     |||||||||    
T  34352404 ggacctctct 34352395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 41718666 - 41718557
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  41718666 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 41718567  T
Q  345 agacctctct 354  Q
     |||||||||    
T  41718566 ggacctctct 41718557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Complemental strand, 41723392 - 41723283
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  41723392 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 41723293  T
Q  345 agacctctct 354  Q
     |||||||||    
T  41723292 ggacctctct 41723283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 9439433 - 9439542
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  9439433 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 9439532  T
Q  345 agacctctct 354  Q
     |||||||||    
T  9439533 ggacctctct 9439542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 354
Target Start/End: Original strand, 9444153 - 9444262
Alignment:
Q  247 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 344  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  9444153 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 9444252  T
Q  345 agacctctct 354  Q
     |||||||||    
T  9444253 ggacctctct 9444262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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