View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_11 (Length: 433)
Name: NF18690_low_11
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 2263773 - 2264174
Alignment:
| Q |
16 |
atgtagccagaatcattctttttgttagaccaaacatggaaaagctctttaatcgaagttttaacttccgtgactcgaacatggctaagttgttccattc |
115 |
Q |
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| T |
2263773 |
atgtagccagaatcattctttttgttagaccaaacatggaaaagctctttaatcgaagttttaacttccgtgactcgaacatggctaagctgttccattc |
2263872 |
T |
|
| Q |
116 |
gacgattcgataggaagatactaacaattttacgcatttcgcgccagtaaggaccatagggtgcaaaaccaaagctagcttggttgtaagctatatgttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2263873 |
gacgattcgataggaagatactaacaattttacgcatttcgcgccagtaaggaccatagggtgcaaaaccaaagctagcttggttataagctatatgttc |
2263972 |
T |
|
| Q |
216 |
aattgcaacaagtttagaacgagacgaaacggcaacatcgtttatagtgtaacactcttttgccatttcccaattgcttagtaccaaagcacgatttgta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2263973 |
aattgcaacaagtttagaacgagacgaaacggcaacatcgtttatagtgtaacactcttttgccatttcccaattgcttagtaccaaagcacgatttgta |
2264072 |
T |
|
| Q |
316 |
ccaagttttatggtgaaaaggggtccgtatttgttagccatggtgcctaatgttttatgaggtgttttagaaccacctaagactaagaggtgaccaagta |
415 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2264073 |
ccaagttttatggtgaataggggtccatatttgttagccatggtgcctaatgttttatgaggtgttttagaaccacctaagactaagaggtgaccaagta |
2264172 |
T |
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| Q |
416 |
tt |
417 |
Q |
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|| |
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| T |
2264173 |
tt |
2264174 |
T |
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