View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18690_low_12 (Length: 420)

Name: NF18690_low_12
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18690_low_12
NF18690_low_12
[»] chr3 (4 HSPs)
chr3 (18-381)||(21121640-21122003)
chr3 (143-236)||(52259208-52259301)
chr3 (313-381)||(21114508-21114576)
chr3 (138-224)||(42314050-42314135)
[»] chr7 (7 HSPs)
chr7 (138-236)||(19531772-19531870)
chr7 (140-184)||(23719059-23719103)
chr7 (139-207)||(36478662-36478730)
chr7 (138-212)||(48030251-48030325)
chr7 (138-184)||(13141445-13141491)
chr7 (143-212)||(29892866-29892935)
chr7 (144-236)||(30861976-30862068)
[»] chr2 (6 HSPs)
chr2 (136-236)||(30977514-30977614)
chr2 (137-223)||(26855221-26855307)
chr2 (137-190)||(3389319-3389372)
chr2 (140-214)||(31606281-31606355)
chr2 (138-177)||(27494919-27494958)
chr2 (40-122)||(31642876-31642958)
[»] chr6 (2 HSPs)
chr6 (137-223)||(34631264-34631350)
chr6 (67-119)||(21813917-21813969)
[»] scaffold0533 (1 HSPs)
scaffold0533 (129-181)||(3184-3235)
[»] chr4 (4 HSPs)
chr4 (145-184)||(9791966-9792005)
chr4 (148-236)||(21120133-21120221)
chr4 (136-206)||(37090537-37090607)
chr4 (143-212)||(8525631-8525700)
[»] chr1 (4 HSPs)
chr1 (138-181)||(2752448-2752491)
chr1 (128-236)||(38639311-38639419)
chr1 (138-224)||(328422-328507)
chr1 (147-231)||(897264-897347)
[»] chr8 (1 HSPs)
chr8 (143-212)||(45218435-45218504)
[»] chr5 (4 HSPs)
chr5 (143-212)||(14811220-14811289)
chr5 (163-257)||(4523928-4524022)
chr5 (143-196)||(18615744-18615797)
chr5 (67-123)||(4524057-4524113)
[»] scaffold0285 (1 HSPs)
scaffold0285 (143-184)||(13187-13228)


Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 21121640 - 21122003
Alignment:
Q  18 ttaatcatatactccctgggtctcctgtaacaaaaatcacgaatgttaaaagaaaaaatgtcggagtaataaatttgtctcatgtgtgtgtgaatattac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21121640 ttaatcatatactccctgggtctcctgtaacaaaaatcacgaatgttaaaagaaaaaatgtcggagtaataaatttgtctcatgtgtgtgtgaatattac 21121739  T
Q  118 taaattgtcggtcatttttgtatagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21121740 taaattgtcggtcatttttgtatagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgt 21121839  T
Q  218 aataaatatatctagaaatctatagagtgtcttatatttatcgacaaaactttttgtaaattatcttataattggagacaggagtattccatctttgata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21121840 aataaatatatctagaaatctatagagtgtcttatatttatcgacaaaactttttgtaaattatcttataattggagacaggagtattccatctttgata 21121939  T
Q  318 gatctttgactggtttgtgcacatgattatattatcaggttgcctttacttgatggcaaatatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21121940 gatctttgactggtttgtgcacatgattatattatcaggttgcctttacttgatggcaaatatt 21122003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 52259301 - 52259208
Alignment:
Q  143 atatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaatatatctagaaat 236  Q
    ||||||||||||||||  | ||||||| ||||||| | |||| ||| |||||||||| ||| | |||||| | |||||||||  ||||||||||    
T  52259301 atatatttaatgttaacctatcatattccaagatacaatgatagtattaataaggggtatactgggaaaaagagtaataaatgcatctagaaat 52259208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 21114508 - 21114576
Alignment:
Q  313 tgatagatctttgactggtttgtgcacatgattatattatcaggttgcctttacttgatggcaaatatt 381  Q
    |||| |||||||||||  |||||| ||| |||| | ||||||||||| ||||| |||||||||||||||    
T  21114508 tgatggatctttgactaatttgtgtacacgattctgttatcaggttgtctttatttgatggcaaatatt 21114576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 224
Target Start/End: Complemental strand, 42314135 - 42314050
Alignment:
Q  138 tatagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaat 224  Q
    |||||| |||||||||||||| ||| ||||||||||| || ||||||  || |||| |||||  ||||||||||| | |||||||||    
T  42314135 tatagagatatttaatgttaacttt-catatttcaaggtatattgataatattaatgaggggtgtatttggaaaaagagtaataaat 42314050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 19531870 - 19531772
Alignment:
Q  138 tatagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaatatatctagaaat 236  Q
    ||||||| ||||||||| ||  |||||||||||||||||| |||||||||| |||||||||| || ||||||||| | ||||||||| |||||| ||||    
T  19531870 tatagatgtatttaatgctatcttttcatatttcaagatacattgatggtactaataaggggtatgtttggaaaaagagtaataaatgtatctaaaaat 19531772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 23719103 - 23719059
Alignment:
Q  140 tagatatatttaatgttaatttttcatatttcaagataaattgat 184  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||    
T  23719103 tagatatatttaatgttaatttttcatatttcaatatatattgat 23719059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 36478662 - 36478730
Alignment:
Q  139 atagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttg 207  Q
    |||||||||||||||||||| |||||||||||||||||| || |||  || |||||||| | |||||||    
T  36478662 atagatatatttaatgttaacttttcatatttcaagatatatcgataatattaataaggagtatatttg 36478730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 48030325 - 48030251
Alignment:
Q  138 tatagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaa 212  Q
    |||||||||||| |||||||| |||||||||| |||||||||||  | ||| |||||||||  ||||||| ||||    
T  48030325 tatagatatattcaatgttaacttttcatattccaagataaatttgtagtattaataagggatatatttgaaaaa 48030251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 13141445 - 13141491
Alignment:
Q  138 tatagatatatttaatgttaatttttcatatttcaagataaattgat 184  Q
    |||||| |||||||||||||| ||||||||||||||| || ||||||    
T  13141445 tatagagatatttaatgttaacttttcatatttcaaggtatattgat 13141491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 29892866 - 29892935
Alignment:
Q  143 atatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaa 212  Q
    |||||||||||||||| |||||||||  ||| | |||||| | ||| |||||||||| ||||||| ||||    
T  29892866 atatatttaatgttaacttttcatataccaaaacaaattggtagtattaataaggggtatatttgaaaaa 29892935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 30861976 - 30862068
Alignment:
Q  144 tatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaatatatctagaaat 236  Q
    ||||||||||| |||||||||||||  ||| | |||||| |  || ||||||| ||  ||||| ||||| | ||||||||| |||||||||||    
T  30861976 tatatttaatgataatttttcatataccaaaacaaattggtaatattaataagaggtgtattttgaaaaagagtaataaatgtatctagaaat 30862068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 30977614 - 30977514
Alignment:
Q  136 tgtatagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaatatatctagaaa 235  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||||||| ||| |||| |  || ||| |||||||| | |||||||||| |||||||||    
T  30977614 tgtatagatatatttaatattaacttttcgtatttcaagataaattgatagtattaatcaatggtatagttggaaaaggagtaataaatacatctagaaa 30977515  T
Q  236 t 236  Q
    |    
T  30977514 t 30977514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 26855307 - 26855221
Alignment:
Q  137 gtatagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaa 223  Q
    ||||||||||||| |||||||| |||||||||| ||||||| |||||| | | ||||||||||||||| ||||| | | ||||||||    
T  26855307 gtatagatatattcaatgttaacttttcatattccaagatacattgatagaattaataaggggcatatgtggaataagagtaataaa 26855221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 3389319 - 3389372
Alignment:
Q  137 gtatagatatatttaatgttaatttttcatatttcaagataaattgatggtaat 190  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  3389319 gtatagatatatttaatgttagtttttcatatttcaagatacattgatagtaat 3389372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 31606281 - 31606355
Alignment:
Q  140 tagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatg 214  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||| ||| ||||||| | ||| | |||||||||    
T  31606281 tagatatatttaatgttaatatttcacatttcatgataaattgatagtattaataagagacatgtgtggaaaatg 31606355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 177
Target Start/End: Original strand, 27494919 - 27494958
Alignment:
Q  138 tatagatatatttaatgttaatttttcatatttcaagata 177  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  27494919 tataaatatatttaatgttaatttttcatatttcaagata 27494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 122
Target Start/End: Complemental strand, 31642958 - 31642876
Alignment:
Q  40 tcctgtaacaaaaatcacgaatgttaaaagaaaaaatgtcggagtaataaatttgtctcatgtgtgtgtgaatattactaaat 122  Q
    |||| ||||||||||||||| | |||| ||||||  ||| ||||||||| ||||||||||  | ||||||| |||||| ||||    
T  31642958 tcctttaacaaaaatcacgagtattaagagaaaagttgttggagtaatacatttgtctcaaatatgtgtgactattaccaaat 31642876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 34631350 - 34631264
Alignment:
Q  137 gtatagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaa 223  Q
    ||||||||||||| |||||||| |||||||||| ||||||| |||||| | | ||||||||||||||| ||||| | | ||||||||    
T  34631350 gtatagatatattcaatgttaagttttcatattccaagatacattgatagaattaataaggggcatatgtggaataagagtaataaa 34631264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 21813917 - 21813969
Alignment:
Q  67 aagaaaaaatgtcggagtaataaatttgtctcatgtgtgtgtgaatattacta 119  Q
    |||||||  ||| ||||||||||||||||||||  ||||||||| ||||||||    
T  21813917 aagaaaagttgttggagtaataaatttgtctcaaatgtgtgtgattattacta 21813969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 3184 - 3235
Alignment:
Q  129 tcatttttgtatagatatatttaatgttaatttttcatatttcaagataaatt 181  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||||    
T  3184 tcatttgtgtataaatatatttaatgtta-tttttcatatttcaagataaatt 3235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 9792005 - 9791966
Alignment:
Q  145 atatttaatgttaatttttcatatttcaagataaattgat 184  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  9792005 atatttaatgttaatttttcatatttcaagatatattgat 9791966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 21120221 - 21120133
Alignment:
Q  148 tttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaatatatctagaaat 236  Q
    |||||| |||| |||| |||| |||||| |||||  | ||| |||||||||| |||||||||||| | ||||| |||| ||||||||||    
T  21120221 tttaatattaacttttgatatatcaagacaaattattagtattaataaggggtatatttggaaaaagagtaatcaatacatctagaaat 21120133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 37090537 - 37090607
Alignment:
Q  136 tgtatagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatattt 206  Q
    |||||| ||||||||||| |||| |||| |||||| |||||| |||||  ||| |||||||||| ||||||    
T  37090537 tgtataaatatatttaatattaaatttttatattttaagatacattgaaagtattaataaggggtatattt 37090607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 8525700 - 8525631
Alignment:
Q  143 atatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaa 212  Q
    |||||||||||  ||| |||||||||  ||||| |||||||| ||| |||||||||| ||||||| ||||    
T  8525700 atatatttaattctaacttttcatataccaagacaaattgatagtattaataaggggtatatttgcaaaa 8525631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 2752448 - 2752491
Alignment:
Q  138 tatagatatatttaatgttaatttttcatatttcaagataaatt 181  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  2752448 tatagatatattcaatgttaattttttatatttcaagataaatt 2752491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 38639311 - 38639419
Alignment:
Q  128 gtcatttttgtatagatatatttaatgttaatttttcatatttcaaga-taaattgatggtaataataaggggcatatttggaaaatgcgtaataaatat 226  Q
    ||||||| |||||||||| |||||||||||| ||||||||| |||| | || |||||| ||| |||||||||| || |||  |||| | || |||||||     
T  38639311 gtcatttgtgtatagatacatttaatgttaacttttcatatctcaaaattatattgatagtattaataaggggtat-ttttaaaaaagagtgataaatac 38639409  T
Q  227 atctagaaat 236  Q
    ||||||||||    
T  38639410 atctagaaat 38639419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 328422 - 328507
Alignment:
Q  138 tatagatatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaat 224  Q
    |||||| |||||||||||||| ||| ||||||||||| || ||||||  || |||| |||||  ||||||||||| | |||||||||    
T  328422 tatagagatatttaatgttaacttt-catatttcaaggtatattgataatattaatgaggggtgtatttggaaaaagagtaataaat 328507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 231
Target Start/End: Original strand, 897264 - 897347
Alignment:
Q  147 atttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaatatatcta 231  Q
    ||||||||||| |||| |||||| |||||||||| ||| ||| ||||||  ||  ||||||||||| | |||||||||| |||||    
T  897264 atttaatgttactttt-catattccaagataaatagatagtattaataaatggtgtatttggaaaaagagtaataaataaatcta 897347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 45218504 - 45218435
Alignment:
Q  143 atatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaa 212  Q
    |||||||||||||||| |||||||||  ||||| |||||| |  || |||||||||| ||||||||||||    
T  45218504 atatatttaatgttaacttttcatataccaagacaaattggtaatattaataaggggtatatttggaaaa 45218435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 14811289 - 14811220
Alignment:
Q  143 atatatttaatgttaatttttcatatttcaagataaattgatggtaataataaggggcatatttggaaaa 212  Q
    |||||||||||  ||||||||||||| |||||| |||||||| ||| |||||||||| | ||||| ||||    
T  14811289 atatatttaataataatttttcatatatcaagacaaattgatagtattaataaggggtaaatttgaaaaa 14811220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 257
Target Start/End: Complemental strand, 4524022 - 4523928
Alignment:
Q  163 tcatatttcaagataaattgatggtaataataaggggcatatttggaaaatgcgtaataaatatatctagaaatctatagagtgtcttatattta 257  Q
    ||||||| |||||||| | ||||||| |||||||||| ||| |||||||| | || ||||||  |||||| ||| | ||| | ||||||||||||    
T  4524022 tcatattccaagataattagatggtattaataaggggtataattggaaaaagagtgataaatgcatctagtaatttgtagcgagtcttatattta 4523928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 18615744 - 18615797
Alignment:
Q  143 atatatttaatgttaatttttcatatttcaagataaattgatggtaataataag 196  Q
    |||||||||||||||| ||||||||| || ||| |||||||| ||| |||||||    
T  18615744 atatatttaatgttaacttttcatatctcgagacaaattgatagtattaataag 18615797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 4524113 - 4524057
Alignment:
Q  67 aagaaaaaatgtcggagtaataaatttgtctcatgtgtgtgtgaatattactaaatt 123  Q
    |||||||  ||| |||||||||||||||||| |  ||||||||| ||||||||||||    
T  4524113 aagaaaagttgttggagtaataaatttgtctgaaatgtgtgtgactattactaaatt 4524057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 13228 - 13187
Alignment:
Q  143 atatatttaatgttaatttttcatatttcaagataaattgat 184  Q
    ||||||| |||||||| |||||||||||||||||| ||||||    
T  13228 atatattcaatgttaacttttcatatttcaagatacattgat 13187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University