View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18690_low_14 (Length: 409)

Name: NF18690_low_14
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18690_low_14
NF18690_low_14
[»] chr2 (2 HSPs)
chr2 (1-390)||(32611601-32611993)
chr2 (1-390)||(32629808-32630199)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 32611993 - 32611601
Alignment:
Q  1 cactagcaccaaaaacacctggaccaagaatcttgaagatttgttcacctccagcagccaaatatgattctccatggaacaataagtactcataaaccaa 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32611993 cactagcaccaaaaacacctggaccaagaatcttgaatatttgttcacctccagcagccaaatatgattctccatggaacaataagtactcataaaccaa 32611894  T
Q  101 tatcagaaataaatgaccaagaatgttattagaacatggcaaaaacccatacatttgcttacaatactcctctgaattagaagaagattcagtaataact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32611893 tatcagaaataaatgaccaagaatgttattagaacatggcaaaaacccatacatttgtttacaatactcctctgaattagaagaagattcagtaataact 32611794  T
Q  201 cctttctcattatcattgttaagaagtagataagaatcttcttctgcttgaacatcatcaactccattggaaatcaatttattgggaagaaaacggcttt 300  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32611793 cctttgtcattatcattgttaagaagtagatatgaatcttcttctgcttgaacatcatcaactccattggaaatcaatttattgggaagaaaacggcttt 32611694  T
Q  301 gaacatgaagtgatactataga---aaagaagagaatgaagcatgatgcttttgaaatgtttctcattttgttctatctatctatgatgaact 390  Q
    |||||||||||| || ||||||   |||||| | | ||||||||| |  ||||| |||||||||||||||||| |||||||||||||||||||    
T  32611693 gaacatgaagtgctattatagaaagaaagaaaatattgaagcatgctatttttgtaatgtttctcattttgttttatctatctatgatgaact 32611601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 32630199 - 32629808
Alignment:
Q  1 cactagcaccaaaaacacctggaccaagaatcttgaagatttgttcacctccagcagccaaatatgattctccatggaacaataagtactcataaaccaa 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32630199 cactagcaccaaaaacacctggaccaagaatcttgaatatttgttcacctccagcagccaaatatgattctccatggaacaataagtactcataaaccaa 32630100  T
Q  101 tatcagaaataaatgaccaagaatgttattagaacatggcaaaaacccatacatttgcttacaatactcctctgaattagaagaagattcagtaataact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32630099 tatcagaaataaatgaccaagaatgttattagaacatggcaaaaacccatacatttgtttacaatactcctctgaattagaagaagattcagtaataact 32630000  T
Q  201 cctttctcattatcattgttaagaagtagataagaatcttcttctgcttgaacatcatcaactccattggaaatcaatttattgggaagaaaacggcttt 300  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  32629999 cctttgtcattatcattgttaagaagtagatatgaatcttcttctgcttgaacatcatcaactccattggaaatcaatttattgggaa-taaacggcttt 32629901  T
Q  301 gaacatgaagtgatactataga---aaagaagagaatgaagcatgatgcttttgaaatgtttctcattttgttctatctatctatgatgaact 390  Q
    |||||||||||| || ||||||   |||||| | | ||||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||    
T  32629900 gaacatgaagtgctattatagaaagaaagaaaatattgaagcatgctatttttgtaatgtttctcattttgttctatctatctatgatgaact 32629808  T

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