View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_17 (Length: 365)
Name: NF18690_low_17
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 29224592 - 29224949
Alignment:
| Q |
1 |
aaccctagagccattgtcatcctgcatatatataggtaccatcttaagttatcaaatattattnnnnnnntctgtgaattaattagtcacaactatagtt |
100 |
Q |
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| T |
29224592 |
aaccctagagccattgtcatcctgcatacatataggtaccatcttaagttatcaaataatattaaaaa--tctgtgaatt----agtcacaactatagtt |
29224685 |
T |
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| Q |
101 |
taaaagatacattgcaagttgtttaacactagtagtgtatattaaagttaaacttgtgtgataaatgtttgtggtaaaacaaagtacccgcatgcacaat |
200 |
Q |
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| T |
29224686 |
taaaagatacattgcaagttgtttaacactagtagtgtatattaaagttaaacttgtgtgataaatgtttgtggtaaaacaaagtacccgcatgcacaat |
29224785 |
T |
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| Q |
201 |
tataatgactaattctttaaagtaagtgagatataattttatctaatacttgtgctacactattttgatatacatttccaattttatttagtactacatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29224786 |
tataatgactaattctttaaagtaagtgagatataattttatctaatacttgtgctacactattttgatatacatttccaattttatttagtactacatt |
29224885 |
T |
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| Q |
301 |
tgaggttttgttaggactgtcaactagttccctttcctatgtctaggatacttgtaaacatttat |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29224886 |
tgaggttttgttaggactgtcaactagttccctttcctatgtctaggatacttg-aaacatttat |
29224949 |
T |
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