View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_18 (Length: 357)
Name: NF18690_low_18
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 102 - 343
Target Start/End: Original strand, 16644998 - 16645246
Alignment:
| Q |
102 |
cttattgtgttcatacatataggtatatgtatgtatgggttttaagcaaaaatattaaataaaagaattaagnnnnnnntgtatatataggtgtgatttg |
201 |
Q |
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| T |
16644998 |
cttattgtgatcatacatataggtatatgtac--atgggtttgaagcaaaaatattaaataaaagaattaagaaaaaaatgcatatataggtgtgatttg |
16645095 |
T |
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| Q |
202 |
aaggtaccttgtttgattgctgctggtagagtggttcatgttgaaatagaagtaattgggtggagaaatatatgaaag---------aaatgaaaataaa |
292 |
Q |
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| T |
16645096 |
aaggtaccttgtttgattgctgctggcagagtggttcatgttgaaatagaagtaattgggtggagaaatatatgaaagaccaatggtaaatgaaaataaa |
16645195 |
T |
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| Q |
293 |
accaagaaagagtaatgctaccattgcaaaattcccaagtgtttgcctatg |
343 |
Q |
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| T |
16645196 |
accaagaaagagtaatgctaccattgcaaaattcccaagtgtttgcctatg |
16645246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16644897 - 16644929
Alignment:
| Q |
1 |
gtaataatatttagaatggggtaaaatttatag |
33 |
Q |
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| T |
16644897 |
gtaataatatttagaatggggtaaaatttatag |
16644929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 194 - 341
Target Start/End: Original strand, 1520739 - 1520895
Alignment:
| Q |
194 |
gtgatttgaaggtaccttgtttgattgctgctggtagagtggttcatgttgaaatagaagtaattgggtggagaaatatatgaaag---------aaatg |
284 |
Q |
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| T |
1520739 |
gtgatttgaaagtaccatgtttgattgctgctggcagagtggttcattgtgagatagaagtaattgggtggagaaagatgagaaagaccaatggtaaagg |
1520838 |
T |
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| Q |
285 |
aaaataaaaccaagaaagagtaatgctaccattgcaaaattcccaagtgtttgccta |
341 |
Q |
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| T |
1520839 |
aaaataaaaccaataaagagtaatgctaccattgcaaaactcccaagggtttgccta |
1520895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 196 - 341
Target Start/End: Original strand, 1516555 - 1516709
Alignment:
| Q |
196 |
gatttgaaggtaccttgtttgattgctgctggtagagtggttcatgttgaaatagaagtaattgggtggagaaatatatgaaag---------aaatgaa |
286 |
Q |
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| T |
1516555 |
gatttgaacgtaccatgtttgattgctgctggcagagtggtccattgtgagatagaagtaattgggtggagaaagatgggaatgaccaatggtaaaggaa |
1516654 |
T |
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| Q |
287 |
aataaaaccaagaaagagtaatgctaccattgcaaaattcccaagtgtttgccta |
341 |
Q |
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| T |
1516655 |
aataaaactaacaaagagtaatgctaccattgcaaaactcccaagtgtttgccta |
1516709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 23087344 - 23087298
Alignment:
| Q |
284 |
gaaaataaaaccaagaaagagtaatgctaccattgcaaaattcccaa |
330 |
Q |
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| T |
23087344 |
gaaaataaaaccaccaaagagcaatgctaccattgcaaaatacccaa |
23087298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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