View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_19 (Length: 353)
Name: NF18690_low_19
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 36090808 - 36091058
Alignment:
| Q |
19 |
agaaacaggggaattccaagattgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttgaaacagacaagacaatt |
118 |
Q |
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| T |
36090808 |
agaaacatgggaattcaaagattgagaataatgagaaaaacaagtgagaaaattttaaatgggagattgtgatgttgttgtagaaacagacaagacaact |
36090907 |
T |
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| Q |
119 |
gttatagttgtcaagagnnnnnnncaaaatcctcatagtttacgtggtatagtaacaacgtggtttgtatttgttgtgcatctcattgtgcaacattgca |
218 |
Q |
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| T |
36090908 |
gttatagttgtcaagagaaaaaa-caaaatcctcatagtttacgtggtatagtaacaatgtggtttgtatttgttgtgcatctcattgtgcaacattgca |
36091006 |
T |
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| Q |
219 |
ctctaaatatattgatgcatcctgtagttgttgttaactacataaagaaaaa |
270 |
Q |
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| T |
36091007 |
ctctaaatatattgatgcatcctctagttgttgttaactacatatagaaaaa |
36091058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 266 - 350
Target Start/End: Original strand, 36091466 - 36091550
Alignment:
| Q |
266 |
aaaaatgctatttaaagcgaataagtgccaggccgatacactgtggcatgtatgccgctcacccattatctgatgatgtccatct |
350 |
Q |
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| T |
36091466 |
aaaaatgctatttaaagagagaaagtgccaggccgatacactgtggcatgtatgccgcttacccattatctcatgatttccatct |
36091550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 36100258 - 36100159
Alignment:
| Q |
36 |
aagattgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttgaaacagacaagacaattgttatagttgtcaagag |
135 |
Q |
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| T |
36100258 |
aagattgagaataatgataaaaacaattgagaagattttgaatgggtgatagtgatgttgttgttgaaacagacatgaaaattgttaaggttgtcaagag |
36100159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 21482239 - 21482164
Alignment:
| Q |
52 |
agaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttgaaacagacaagacaattgttatagtt |
127 |
Q |
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| T |
21482239 |
agaaaagcaattgagaaaattttgaaagggtgattgtgatgttgttgttgaaatagacatgacaattgttaaagtt |
21482164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 34972138 - 34972199
Alignment:
| Q |
40 |
ttgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttg |
101 |
Q |
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| T |
34972138 |
ttgagaattatgagaaaaacagttaagaaaattttgaatgggtgattgtgatgttgttgttg |
34972199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 36107356 - 36107321
Alignment:
| Q |
206 |
gtgcaacattgcactctaaatatattgatgcatcct |
241 |
Q |
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| T |
36107356 |
gtgcaacattgcactctatatatattgatgcatcct |
36107321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 8338129 - 8338046
Alignment:
| Q |
52 |
agaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttgaaacagacaagacaattgttatagttgtcaagag |
135 |
Q |
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| T |
8338129 |
agaaaaacaattgagaaaagtttaaatggatgattgtgatgttgttgttgaaatagacataaaaattgttaaggttgtcaagag |
8338046 |
T |
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