View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18690_low_2 (Length: 731)
Name: NF18690_low_2
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 650; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 16 - 720
Target Start/End: Complemental strand, 39783031 - 39782326
Alignment:
| Q |
16 |
atcttcttgtctaacatatagcacatcctttcctcccatgctaaccccgacaatgacatgagttccaaaacgttcaatgaaccttgcatgaattggtata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39783031 |
atcttcttgtctaacatatagcacatcctttcctcccatgctaaccccgacaatgacttgagttccaaaacgttcaatgaaccttgcatgaattggtata |
39782932 |
T |
|
| Q |
116 |
acnnnnnnnna-tcattgtgaagttacaaatatagattgtcaatcgtttcactcaatgacatcccaacttcaatgttatttgcatcataggaaagagttt |
214 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39782931 |
actttttttttctcattgtgaagttacaaatatagattgtcaatagtttcactcaatgacatcccaacttcaatgttatttgcatcataggaaagagttt |
39782832 |
T |
|
| Q |
215 |
cacagtcgaatgattaatgaagaggaatgcttaacaaaaaattggatgaaattttaggtgcgattagcgaagttgtttcattcattatatctcgtcaaaa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39782831 |
cacagtcgaatgattaatgaagaggaatgcttaacaaaaaattggatgaaattttaggtgcgattagtgaagttgtttcattcattatatctcgtcaaaa |
39782732 |
T |
|
| Q |
315 |
ataaaataggttcaaattgacaaaaagaacggatatcaacttgcatatgtataaaaacttgatttattgttagtatgacttgttacttgttattatagtt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39782731 |
ataaaataggttcaaattgacaaaaagaacggatatcaacttgcatatgtataaaaacttgatttattgttaggatgacttgttacttgttattatagtt |
39782632 |
T |
|
| Q |
415 |
acgttgatagaaagaagtgagtagacactattagtacctaccatgataaaggttttgtgaaatggtaagagtgcaagagaaacacacgatttttaataga |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39782631 |
acgttgatagaaagaagtgagtagacactattagtacctaccatgataaaggttttgtgaaatggtaagagtgcaagagaaacgcacgatttttaataga |
39782532 |
T |
|
| Q |
515 |
atacatccttttaatacagggagttgttactactaccagtactacaatttgaatcgttgaccggaatacccacccatgtgcacttgtagtacatccctgt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39782531 |
atacatccttttaatacagggagttgttactactaccagtactacaatttgaatcgttgaccggaatacccacccatgtgcacttgtagtacatccctgt |
39782432 |
T |
|
| Q |
615 |
gggctgtggctaataaaaaataatagaacatatctattgcatgtgccaaacatatattcaataccagggtctaaccttgccactgcctcagggtcccatg |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39782431 |
gggctgtggctaataaaaaataatagaacatatctattgcatgtgccaaacatatattcaataccagggtctaaccttgccactgcctcagggtcccatg |
39782332 |
T |
|
| Q |
715 |
atgatg |
720 |
Q |
| |
|
|||||| |
|
|
| T |
39782331 |
atgatg |
39782326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 16 - 550
Target Start/End: Complemental strand, 39789483 - 39788945
Alignment:
| Q |
16 |
atcttcttgtctaacatatagcacatcctttcctcccatgctaaccccgacaatgacatgagttccaaaacgttcaatgaaccttgcatgaattggtata |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
39789483 |
atcttcttgtctaatgtatagcacatcctttcctcccatgctcaccccgactatgacatgagttccaaaacgttcaatgaaccttgcatgaatcggcata |
39789384 |
T |
|
| Q |
116 |
acnnnnnnnnatcattgtgaagttacaaatatagattgtcaatcgtttcactcaatgacatccc--aacttcaatgttatttgcatcataggaaagagtt |
213 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||| |||||| ||| ||||| ||| || || || ||||||||||||||| ||||| | |
|
|
| T |
39789383 |
a-attattttatcattgtgaagttacaaatatagactgtcaatagtttcagtcattgacaacccttaatcacagtgctatttgcatcatagggaagagct |
39789285 |
T |
|
| Q |
214 |
tcacagtcgaatgattaatgaagaggaatgcttaacaaaaaattggatgaaattttaggtgcgattagcgaagtt-gtttcattcattatatctcgtcaa |
312 |
Q |
| |
|
|||||||| ||| || |||||| || || | || |||| | |||||||||| ||||| | | ||||||| |||| ||||||||||||| ||| | |
|
|
| T |
39789284 |
tcacagtcaaataatcaatgaacagcaa--cacaaaaaaatttccgatgaaatttgaggtg---tgaacgaagttggtttaattcattatatctggtcta |
39789190 |
T |
|
| Q |
313 |
aaataaaataggttcaaattgacaaaaagaacggatatcaacttgcatatgtataaaaacttgatttattgttagtatgacttgttacttgttattatag |
412 |
Q |
| |
|
||||| |||||||| |||||||||||| || |||||||||| ||||||||| || ||||||| ||||||||||| |||| ||||| | || ||| |
|
|
| T |
39789189 |
aaatagaataggtttaaattgacaaaa--aaaggatatcaacatgcatatgtttacaaacttggtttattgttaggatgaattgttgttacttgttactc |
39789092 |
T |
|
| Q |
413 |
ttacgttgatagaaagaagtgagta----------gacactattagtacctaccatgataaaggttttgtgaaatggtaagagtgcaagagaaacacacg |
502 |
Q |
| |
|
||| |||||||||||||||||| || || ||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||| || |
|
|
| T |
39789091 |
tta-gttgatagaaagaagtgactagattatttaggaatctattagtacctatcatgataaaggttttttgaaatggtaagtatgcaagagaaacactcg |
39788993 |
T |
|
| Q |
503 |
atttttaatagaatacatccttttaatacagggagttgttactactac |
550 |
Q |
| |
|
|||||||||||||||| || ||||||| | | ||||| |||||||||| |
|
|
| T |
39788992 |
atttttaatagaatacttcattttaatccggcgagtttttactactac |
39788945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 39794203 - 39794046
Alignment:
| Q |
20 |
tcttgtctaacatatagcacatcctttcctcccatgctaaccccgacaatgacatgagttccaaaacgttcaatgaaccttgcatgaattggtataacnn |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||| ||| |||| | |||| |
|
|
| T |
39794203 |
tcttgtctaacgtatagcacatcctttcctcccatgctcaccccaactatgacatgagttccgaaacgttcaatgaacctagcacgaatcagcataa-at |
39794105 |
T |
|
| Q |
120 |
nnnnnnatcattgtgaagttacaaatatagattgtcaatcgtttcactcaatgacatcc |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
39794104 |
tactttatcattgtgaagttacaaatatagattgtcaatagtttcacctaatgacatcc |
39794046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 618 - 720
Target Start/End: Complemental strand, 39788883 - 39788783
Alignment:
| Q |
618 |
ctgtggctaataaaaaataatagaacatatctattgcatgtgccaaacatatattcaataccagggtctaaccttgccactgcctcagggtcccatgatg |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
39788883 |
ctgtggctaataaaaaataatagaacatatctattgcatgtgccaaacaaatg--cagttccagggtctaaccttgccaaagcttcagggtcccatgatg |
39788786 |
T |
|
| Q |
718 |
atg |
720 |
Q |
| |
|
||| |
|
|
| T |
39788785 |
atg |
39788783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 39776362 - 39776265
Alignment:
| Q |
16 |
atcttcttgtctaacatatagcacatcctttcctcccatgctaaccccgacaatgacatgagttccaaaacgttcaatgaaccttgcatgaattggta |
113 |
Q |
| |
|
|||||||||||||||||| | ||||||||| ||||||||||| |||||||| || |||||||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
39776362 |
atcttcttgtctaacataaaacacatccttccctcccatgctcaccccgactatcacatgagttccaaaacgttctatgaaccttgtatgaatcggta |
39776265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 276 - 403
Target Start/End: Complemental strand, 39793976 - 39793850
Alignment:
| Q |
276 |
gattagcgaagttgttt-cattcattatatctcgtcaaaaataaaataggttcaaattgacaaaaagaacggatatcaacttgcatatgtataaaaactt |
374 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || || || |||| |||||||| ||||||||| ||| | | ||| ||||||||||||||||| |||||| |
|
|
| T |
39793976 |
gattaacgaagttgttttcattcattataactggtaaagaatataataggttgaaattgacagaaaaa--gaataacaacttgcatatgtatataaactt |
39793879 |
T |
|
| Q |
375 |
gatttattgttagtatgacttgttacttg |
403 |
Q |
| |
|
| |||| |||||| |||| |||||||||| |
|
|
| T |
39793878 |
ggtttactgttaggatgagttgttacttg |
39793850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University