View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_20 (Length: 320)
Name: NF18690_low_20
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 16644590 - 16644893
Alignment:
| Q |
17 |
aagatcttgttccttctccaagccaaaagctgcttaaaaatagatcaaacatggtgatggcatcaccctttacatcttgttctacataagctttatttat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16644590 |
aagatcttgttccttctccaagccaaaagctgcttaaaaatagatcaaacatggtgatggcatcaccctttacatcttgttctacataagctttatttat |
16644689 |
T |
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| Q |
117 |
tatagcaattatcaccgttttgtaatttctcattgaagctttggctaaagctttgtcaagaccatctctgtatgattcattaatattggtgctctacatt |
216 |
Q |
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| T |
16644690 |
tatagcaattatcaccgttttgtaatttctcattgaagctttggctaaagctttgtcaagaccatctctgtatgattcattaatattggtgctctacatt |
16644789 |
T |
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| Q |
217 |
aatgataaagaaagacaaattattgaaaatttcaaacaagccatggagaaaagtaaacaattaaattcttacgtgaaccaaccaattaaactttataata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
16644790 |
aatgataaagaaagacaaattattgaaaatttcaaacaagccatggagaaaagtaaacaattaaattcttacgtgaacaaaccaattaaacttcataata |
16644889 |
T |
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| Q |
317 |
tatt |
320 |
Q |
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|||| |
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| T |
16644890 |
tatt |
16644893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 1520362 - 1520633
Alignment:
| Q |
17 |
aagatcttgttccttctccaagccaaaagctgcttaaaaatagatcaaacatggtgatggcatcaccctttacatcttgttctacataagctttatttat |
116 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||| |
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| T |
1520362 |
aagatcttgttccttctccaagccaaaaactgcttaaaaatagatcaaacatagtgatggtatcaccatttacatcttgttctacataagccttatttac |
1520461 |
T |
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| Q |
117 |
tatagcaattatcaccgttttgtaatttctcattgaagctttggctaaagctttgtcaagaccatctctgtatgattcattaatattggtgctctacatt |
216 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| |
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| T |
1520462 |
catagcaattatcaccgttttgttatttctgattgaagctttggctaaagctttgtcaagaccatctccatatgattcattaacataggtgctctacatt |
1520561 |
T |
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| Q |
217 |
aatgat-------aaagaaagacaaattattgaaaatttcaaacaagccatggagaaaagtaaacaattaaa |
281 |
Q |
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||| || ||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
1520562 |
aataataataataaaaaaaaaacaaattattgaaaatttcaatcaagccatggagaaaattaaacaattaaa |
1520633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 1516165 - 1516404
Alignment:
| Q |
17 |
aagatcttgttccttctccaagccaaaagctgcttaaaaatagatcaaacatggtgatggcatcaccctttacatcttgttctacataagctttatttat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||| |||| |
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| T |
1516165 |
aagatcttgttccttctccaagccaaaagctgcttaaaaatagatcaaacatggtaacggcatcacccattacatcttgttctacgtaagctttgtttac |
1516264 |
T |
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| Q |
117 |
tatagcaattatcaccgttttgtaatttctcattgaagctttggctaaagctttgtcaagaccatctctgtatgattcattaatattggtgctctacatt |
216 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||| | |||| |||||||||||||| ||||| || | |
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| T |
1516265 |
tatagcaattatcaccgttttgttatttcccattgaagctttggccaaagctttgtcaagtccatcaccatatgcttcattaatattggagctctgcaat |
1516364 |
T |
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| Q |
217 |
aatgataaagaaagacaaattattgaaaatttcaaacaag |
256 |
Q |
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||| ||||||||| ||||||| |||| |||||||| |||| |
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| T |
1516365 |
aataataaagaaaaacaaatttttgacaatttcaagcaag |
1516404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 1524328 - 1524471
Alignment:
| Q |
17 |
aagatcttgttccttctccaagccaaaagctgcttaaaaatagatcaaacatggtgatggcatcaccctttacatcttgttctacataagctttatttat |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1524328 |
aagatcttgttccttctccaagccaaaagctgtttaaaaatagatcaaacatggtggtgggatcaccctttacatcttgttctacataagctttatttac |
1524427 |
T |
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| Q |
117 |
tatagcaattatcaccgttttgtaatttctcattgaagctttgg |
160 |
Q |
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| T |
1524428 |
tacagcaataattaatgttttgttatttcccattgaagctttgg |
1524471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 31791815 - 31791703
Alignment:
| Q |
25 |
gttccttctccaagccaaaagctgcttaaaaatagatcaaacatggtgatggcatcaccctttacatcttgttctacataagctttatttattatagcaa |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
31791815 |
gttccttctccaagccaaaagctgcttaaaaatagatcaaacatggtaatggcatcaccctttacatcttgttctacataagctttatttactacagcaa |
31791716 |
T |
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| Q |
125 |
ttatcaccgtttt |
137 |
Q |
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| T |
31791715 |
ttatcaccgtttt |
31791703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 31791690 - 31791650
Alignment:
| Q |
280 |
aattcttacgtgaaccaaccaattaaactttataatatatt |
320 |
Q |
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||||||||||||||| |||||||||||||| |||||||||| |
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| T |
31791690 |
aattcttacgtgaacaaaccaattaaacttcataatatatt |
31791650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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