View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_22 (Length: 299)
Name: NF18690_low_22
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 3593974 - 3594247
Alignment:
| Q |
1 |
agcttttgatgacgcggtaaagggcacctaattccttttgcagctatcctgcactcggatatagaaaagcttaggcaaaatgagtaattgaacccttgta |
100 |
Q |
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| T |
3593974 |
agcttttgatgacgcggtttagggcacctaattccttttgcagctatcctgcactcggatatagaaaagcttaggcaaaatgagtaattgaacccttgta |
3594073 |
T |
|
| Q |
101 |
tattcgaaaaatatgaaagaatgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttttcccatttctctgggatta |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594074 |
tattggaaaaatatgaaagaatgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttttcccatttctctgggatta |
3594173 |
T |
|
| Q |
201 |
cgactacagtaggcacgttcaaagcggcgatctcctttgacatatttatttctatccctgaaatccaatgagat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594174 |
cgactacagtaggcacgttcaaagcggcgatctcctttgacatatttatttctatccctgaaatccaatgagat |
3594247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 261
Target Start/End: Original strand, 28933872 - 28934014
Alignment:
| Q |
119 |
gaatgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttttcccatttctctgggattacgactacagtaggcacgt |
218 |
Q |
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||||||||||| |||| |||||||||| ||||||| | |||||||||||||||||||||| |||||| || ||||||| | |||||| | | |
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| T |
28933872 |
gaatgaaaaaagagcaaatgcaaacctcgaaagattactcctttccttttctgcccatgtttttaccatttttcggggattagacccacagtactcgttt |
28933971 |
T |
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| Q |
219 |
tcaaagcggcgatctcctttgacatatttatttctatccctga |
261 |
Q |
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| T |
28933972 |
tcaaaccggcgatctcctttcacatatctagctctatccctga |
28934014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 35714940 - 35714861
Alignment:
| Q |
121 |
atgaaaaaatagcatatgcaaacctataaagattcttgagttccttttctgcccatgtttttcccatttctctgggatta |
200 |
Q |
| |
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|||||| || |||| |||||||||| | ||||||| ||| ||||||||||||||||||||| |||||| || ||||||| |
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| T |
35714940 |
atgaaataagagcaaatgcaaacctcttaagattcctgaattccttttctgcccatgttttaaccatttttcggggatta |
35714861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 8490531 - 8490590
Alignment:
| Q |
214 |
cacgttcaaagcggcgatctcctttgacatatttatttctatccctgaaatccaatgagat |
274 |
Q |
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||||||||||| ||| |||||||||||||||||| ||||||||||||| || ||||||||| |
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| T |
8490531 |
cacgttcaaagtggcaatctcctttgacatatttttttctatccctgatat-caatgagat |
8490590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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