View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_23 (Length: 288)
Name: NF18690_low_23
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_23 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 11405329 - 11405601
Alignment:
| Q |
1 |
tacacaatctaatgtattatacacatctatcaaatttaataacttttaaatttctaatcaaagaacttttttaaaatatcggattttatttggttaggat |
100 |
Q |
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| T |
11405329 |
tacacaatctaatgtattatacacacttatcaaatttaataatttttaaatttctaatcaaagaacttttttaaaatatcggattttatttggatatgat |
11405428 |
T |
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| Q |
101 |
aaaattctatatgacaaaagtacattactgnnnnnnnnaccatcagatttgttatgctatagaaaccacaaacttcaactacttccaatttcacttcctc |
200 |
Q |
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| T |
11405429 |
aagattctatatgacaaaagtacattactgttttttttaccatcagatttgttatgctatagaaaccacaaacttcaactactttcaatttcacttcctc |
11405528 |
T |
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| Q |
201 |
cagtgtaatttcgtccaaaaacattaccatggaagctatcaaaactttacttcaaaaagacccccttcattat |
273 |
Q |
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| T |
11405529 |
tagtgtaatttcgtccaaaaacattaccatggaagctatcaaaactttacttcaaaaatacccccttcattat |
11405601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 17024507 - 17024781
Alignment:
| Q |
1 |
tacacaatctaatgtattatacacatctatcaaatttaataacttttaaatttctaatcaaagaacttttttaaaatatcggattttatttggttaggat |
100 |
Q |
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| T |
17024507 |
tacacaatctaatgtatcatacacagttatcaaatttaatcacttttaaatttataatcaaataactttttaaaaatatcggatttaatttggataggat |
17024606 |
T |
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| Q |
101 |
aaaattctatatgacaaaagtacattactgnnnnnnnn-accatcagatttgttatgctatagaaaccacaaacttcaactacttccaatttcacttcc- |
198 |
Q |
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| T |
17024607 |
aagattctatatgacaaaagtacattacaatatttttttaccatcagcttttttatgctatagaaaccacaaacttcaactacttccaatttcaattcaa |
17024706 |
T |
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| Q |
199 |
tccagtgtaatttcgtccaaaaacattaccatggaagctatcaaaactttacttcaaaaagacccccttcattat |
273 |
Q |
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| T |
17024707 |
tccattgtaatttattccaaaaacattaccatggaagctatcaaaactttacttaaaaaagacccccttgattat |
17024781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 115486 - 115360
Alignment:
| Q |
1 |
tacacaatctaatgtattatacacatctatcaaatttaataacttttaaatttctaatcaaagaacttttttaaaatatcggattttatttggttaggat |
100 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||||||| |||||| |||||| |||||| |
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| T |
115486 |
tacacaatctaatgtatcatacacacctatcaaatttaataactttttaatttctaatcaaataac-tttttaaaatatgggatttaatttggataggat |
115388 |
T |
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| Q |
101 |
aaaattctatatgacaaaagtacattac |
128 |
Q |
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| T |
115387 |
aagattctatatgaaaaaagtacattac |
115360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 115347 - 115239
Alignment:
| Q |
167 |
cacaaacttcaactacttccaatttcacttcc-tccagtgtaatttcgtccaaaaacattaccatggaagctatcaaaactttacttcaaaaagaccccc |
265 |
Q |
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||||||||||||||||||||||||||| ||| |||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
115347 |
cacaaacttcaactacttccaatttcaattcaatccattgtattttattccaaaaacattaccagagaagctatcaaaactttacttcaaaaagacccac |
115248 |
T |
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| Q |
266 |
ttcattatg |
274 |
Q |
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|| |||||| |
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| T |
115247 |
ttgattatg |
115239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 23569314 - 23569245
Alignment:
| Q |
204 |
tgtaatttcgtccaaaaacattaccatggaagctatcaaaactttacttcaaaaagacccccttcattat |
273 |
Q |
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|||||||| ||| |||| || |||||||||| | |||||||||| ||||||||||||||| ||||||| |
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| T |
23569314 |
tgtaatttattcccaaaatatcaccatggaaggtttcaaaactttgcttcaaaaagaccccactcattat |
23569245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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