View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_24 (Length: 276)
Name: NF18690_low_24
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 87 - 260
Target Start/End: Original strand, 26335629 - 26335802
Alignment:
| Q |
87 |
cacttgaaagctctaacactttagtaaaataagcacaaagttgtaagtgatggttgttaatgcccaattctcagctctatcctattataaatatataagt |
186 |
Q |
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| T |
26335629 |
cacttgaaagctctaacactttagcaaaataagcagaaagttgtaagtgatggttgttactgcccaattctcagctctatcctattataaatatataagt |
26335728 |
T |
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| Q |
187 |
ggttttgtgtgatccactcacggtatctcattattaaattgagtatcctttgaaaaggtatgtcactatttttt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26335729 |
ggttttgtgtgatccactcacggtatctcattattaaattgagtatcctttgaaaaggtatgtcactatttttt |
26335802 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26335596 - 26335628
Alignment:
| Q |
1 |
aatccccacattcatgcccatttctataatccc |
33 |
Q |
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| T |
26335596 |
aatccccacattcatgcccatttctataatccc |
26335628 |
T |
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