View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18690_low_25 (Length: 259)

Name: NF18690_low_25
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18690_low_25
NF18690_low_25
[»] chr4 (9 HSPs)
chr4 (123-244)||(39575950-39576071)
chr4 (1-82)||(39510919-39511000)
chr4 (1-82)||(39543958-39544039)
chr4 (123-188)||(39544104-39544169)
chr4 (123-242)||(39521308-39521427)
chr4 (1-61)||(39580350-39580410)
chr4 (26-81)||(39575829-39575884)
chr4 (1-72)||(39524662-39524733)
chr4 (123-192)||(39524808-39524877)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 39575950 - 39576071
Alignment:
Q  123 attctgagcgttttgtggagttgttatataactgtcatctggcaaccattctctcgataaagtatcagttcgtctatcaatggttcccccaccgacgtta 222  Q
    ||||| |||||||||| || | |||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  39575950 attcttagcgttttgtagattagttacatatctgtcatctggtaaccattctctcgataaagtatcagttcctctatcaacggttcccccaccgacgtta 39576049  T
Q  223 agacgatgtttcgtttccaagg 244  Q
    | ||||||||| ||||||||||    
T  39576050 aaacgatgttttgtttccaagg 39576071  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 39510919 - 39511000
Alignment:
Q  1 acactccaacttatgtttaaacctttagaaccgtttttactctctttagcagtttgataaacaatatctggagcaatatata 82  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||   |||||| |||||||||||||||| |||||||||    
T  39510919 acactccaacttatgtttaaaccttttgaaccgtttgcactctcttggccagttttataaacaatatctggaccaatatata 39511000  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 39543958 - 39544039
Alignment:
Q  1 acactccaacttatgtttaaacctttagaaccgtttttactctctttagcagtttgataaacaatatctggagcaatatata 82  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| |||||||   || |||||||||||||    
T  39543958 acactccaacttatgtttaaacctttagaaccgcttttgctctctttggcagtttcataaacagcgtccggagcaatatata 39544039  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 39544104 - 39544169
Alignment:
Q  123 attctgagcgttttgtggagttgttatataactgtcatctggcaaccattctctcgataaagtatc 188  Q
    ||||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||    
T  39544104 attcttagcgttttgtggattagttatataactgtcatctggtaaccattctctcgataaagtatc 39544169  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 242
Target Start/End: Original strand, 39521308 - 39521427
Alignment:
Q  123 attctgagcgttttgtggagttgttatataactgtcatctggcaaccattctctcgataaagtatcagttcgtctatcaatggttcccccaccgacgtta 222  Q
    ||||| ||||||||||||| | |||| ||||||||||||||  ||||||||||||||||| ||||| |||| |||||| |  |||    |||||||||||    
T  39521308 attcttagcgttttgtggattagttacataactgtcatctgctaaccattctctcgataatgtatcggttcctctatcgacagtttggtcaccgacgtta 39521407  T
Q  223 agacgatgtttcgtttccaa 242  Q
    |||||  |||| ||||||||    
T  39521408 agacggagtttggtttccaa 39521427  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 39580350 - 39580410
Alignment:
Q  1 acactccaacttatgtttaaacctttagaaccgtttttactctctttagcagtttgataaa 61  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||| ||| ||| |||||    
T  39580350 acactccaacttatgtttaaaccgtttgaaccatttttactctctttggcacttttataaa 39580410  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 39575829 - 39575884
Alignment:
Q  26 tagaaccgtttttactctctttagcagtttgataaacaatatctggagcaatatat 81  Q
    ||||||||||  ||||||||||  |||||| |||||||||||||||||||||||||    
T  39575829 tagaaccgttaatactctctttgccagttttataaacaatatctggagcaatatat 39575884  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39524662 - 39524733
Alignment:
Q  1 acactccaacttatgtttaaacctttagaaccgtttttactctctttagcagtttgataaacaatatctgga 72  Q
    |||||||||||||||||||||||  | ||||| ||   |||| |||| ||||||| ||||||||||||||||    
T  39524662 acactccaacttatgtttaaaccgattgaaccattaacactcactttggcagttttataaacaatatctgga 39524733  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 39524808 - 39524877
Alignment:
Q  123 attctgagcgttttgtggagttgttatataactgtcatctggcaaccattctctcgataaagtatcagtt 192  Q
    ||||| ||||||||| |||   |||||||| ||||||||||| ||||||||||| ||||  |||||||||    
T  39524808 attcttagcgttttggggatcagttatatatctgtcatctggtaaccattctcttgatagtgtatcagtt 39524877  T

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